This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.127580 (24 seq.)
>A171000870
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
1015508
1015431
-
Met
CAT
-
¡û
>A171001026
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1575560
1575483
-
Met
CAT
-
¡û
>A171001272
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1437047
1436970
-
Met
CAT
-
¡û
>A171001491
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1155974
1155899
-
Met
CAT
-
¡û
>A171002216
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
1395262
1395339
+
Met
CAT
-
¡û
>A171004497
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1176942
1176865
-
Met
CAT
-
¡û
>WENV180275270
OBHT01001306
[OBHT] metagenome; hydrothermal vent
576
501
-
Met
CAT
[ENA]
¢þ
>WENV180317097
OBKJ01020817
[OBKJ] metagenome; hydrothermal vent
423
348
-
Ile2
CAT
[ENA]
¢þ
>WENV181207905
OFBA01002491
[OFBA] metagenome; hydrothermal vent
1874
1799
-
Ile2
CAT
[ENA]
¢þ
>WENV181212783
OFBU01000081
[OFBU] metagenome; hydrothermal vent
9593
9516
-
Ile2
CAT
[ENA]
¢þ
>WENV181213331
OFBV01000505
[OFBV] metagenome; hydrothermal vent
1297
1222
-
Met
CAT
[ENA]
¢þ
>WENV181213937
OFBW01002990
[OFBW] metagenome; hydrothermal vent
1659
1584
-
Met
CAT
[ENA]
¢þ
>WENV181214341
OFBX01003442
[OFBX] metagenome; hydrothermal vent
459
384
-
Met
CAT
[ENA]
¢þ
>WENV181214571
OFBY01002241
[OFBY] metagenome; hydrothermal vent
847
772
-
Met
CAT
[ENA]
¢þ
>WENV181215054
OFBZ01002118
[OFBZ] metagenome; hydrothermal vent
157
82
-
Met
CAT
[ENA]
¢þ
>WENV181215516
OFCA01001489
[OFCA] metagenome; hydrothermal vent
2897
2972
+
Met
CAT
[ENA]
¢þ
>WENV181216188
OFCB01008443
[OFCB] metagenome; hydrothermal vent
402
327
-
Met
CAT
[ENA]
¢þ
>At0930
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
637772
637849
+
Met
CAT
[Ensembl]
¡û
>W1610001123
ACQW01000016
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
392
315
-
Met
CAT
[ENA]
¡û
>W1610001156
ACQY01000017
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
435
358
-
Met
CAT
[ENA]
¡û
>W1610001545
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
643936
644013
+
Met
CAT
[ENA]
¡û
>W1610001646
ADCA01000007
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
77728
77805
+
Met
CAT
[ENA]
¡û
>W1610004298
AGJL01000052
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
652
574
-
Met
CAT
[ENA]
¡û
>W1610018647
AQUK01000001
Euryarchaeota
Methanocaldococcus villosus KIN24-T80 [AQUK]
683901
683827
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK