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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.12896 (96 seq.)
>W1710815798
LKKO01000021
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
61993
61902
-
Ser
GCT
[ENA]
¡û
>W1710872783
LMMG01000021
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
239008
238917
-
Ser
GCT
[ENA]
¡û
>W1710872878
LMMI01000016
Alphaproteobacteria
Methylobacterium sp. Leaf87 [LMMI]
16649
16558
-
Ser
GCT
[ENA]
¡û
>W1710872958
LMMK01000012
Alphaproteobacteria
Methylobacterium sp. Leaf88 [LMMK]
100798
100889
+
Ser
GCT
[ENA]
¡û
>W1710873192
LMMP01000023
Alphaproteobacteria
Methylobacterium sp. Leaf91 [LMMP]
240216
240125
-
Ser
GCT
[ENA]
¡û
>W1710873366
LMMS01000026
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
215185
215276
+
Ser
GCT
[ENA]
¡û
>W1710873444
LMMU01000001
Alphaproteobacteria
Methylobacterium sp. Leaf99 [LMMU]
1035439
1035348
-
Ser
GCT
[ENA]
¡û
>W1710873541
LMMW01000009
Alphaproteobacteria
Methylobacterium sp. Leaf100 [LMMW]
32482
32391
-
Ser
GCT
[ENA]
¡û
>W1710873598
LMMX01000015
Alphaproteobacteria
Methylobacterium sp. Leaf102 [LMMX]
1586
1495
-
Ser
GCT
[ENA]
¡û
>W1710873913
LMNE01000003
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
18832
18741
-
Ser
GCT
[ENA]
¡û
>W1710874018
LMNG01000017
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
26278
26369
+
Ser
GCT
[ENA]
¡û
>W1710874177
LMNJ01000051
Alphaproteobacteria
Methylobacterium sp. Leaf113 [LMNJ]
68737
68646
-
Ser
GCT
[ENA]
¡û
>W1710874233
LMNL01000001
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
392491
392582
+
Ser
GCT
[ENA]
¡û
>W1710874651
LMNU01000012
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
701074
700983
-
Ser
GCT
[ENA]
¡û
>W1710877792
LMQK01000008
Alphaproteobacteria
Methylobacterium sp. Leaf399 [LMQK]
51162
51071
-
Ser
GCT
[ENA]
¡û
>W1711179427
LWHQ01000026
Alphaproteobacteria
Methylobacterium platani [LWHQ]
54702
54793
+
Ser
GCT
[ENA]
¡û
>W131159753
AQVT01000001
Alphaproteobacteria
Methylobacterium sp. 88A [AQVT]
3128246
3128337
+
Ser
GCT
[ENA]
¡û
>W131163788
ARAA01000066
Alphaproteobacteria
Methylobacterium sp. WSM2598 [ARAA]
97442
97533
+
Ser
GCT
[ENA]
¡û
>w026472
ABAY01000057
Alphaproteobacteria
Methylobacterium sp. 4-46 [ABAY]
17783
17874
+
Ser
GCT
[ENA]
¡û
>WENV180020583
FTCZ01006617
[FTCZ] metagenome; soil
6305
6396
+
Ser
GCT
[ENA]
¡û
>W08006133
ABIP01000005
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [ABIP]
182024
182115
+
Ser
GCT
[ENA]
¡û
>C08006469
CP000943
Alphaproteobacteria
Methylobacterium sp. 4-46 [CP000943]
1510361
1510273
-
Ser
GCT
[Ensembl]
¡û
>W141277773
JAEV01000006
Alphaproteobacteria
Methylobacterium sp. 10 [JAEV]
22388
22297
-
Ser
GCT
[ENA]
¡û
>WENV170681011
LFEF01043119
[LFEF] freshwater metagenome; waterbloom
565
656
+
Ser
GCT
[ENA]
¡û
>C181180082
CP029552
Alphaproteobacteria
Methylobacterium sp. 17Sr1-1 [CP029552]
73998
74089
+
Ser
GCT
-
¡û
>C181180224
CP029553
Alphaproteobacteria
Methylobacterium terrae 17Sr1-28 [CP029553]
4757951
4757860
-
Ser
GCT
-
¡û
>C09107876
CP001349
Alphaproteobacteria
Methylobacterium nodulans ORS 2060 [CP001349]
1066238
1066147
-
Ser
GCT
[Ensembl]
¡û
>W1911708577
QOWC01000160
Alphaproteobacteria
Methylobacterium sp. MIMD6 [QOWC]
2724
2815
+
Ser
GCT
[ENA]
¡û
>W1810057200
PDHT01000012
Alphaproteobacteria
Methylobacterium sp. V23 [PDHT]
66604
66513
-
Ser
GCT
[ENA]
¡û
>W1810079893
PELK01001449
Alphaproteobacteria
Methylobacterium frigidaeris IER25-16 [PELK]
3600
3509
-
Ser
GCT
[ENA]
¡û
>SRA1014144
SRR023845.17999
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
167
258
+
Ser
GCT
[SRA]
>SRA1014869
SRR023845.353881
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
167
258
+
Ser
GCT
[SRA]
>SRA1014949
SRR023845.393912
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
270
179
-
Ser
GCT
[SRA]
>W2010324515
CACTHX010000002
Alphaproteobacteria
Methylobacterium brachiatum [CACTHX]
609626
609535
-
Ser
GCT
[ENA]
¡û
>W2010472592
JAAHTB010000031
Alphaproteobacteria
Methylobacterium sp. BTF04 [JAAHTB]
4176
4085
-
Ser
GCT
[ENA]
¡û
>W2010493428
JAAKGV010000023
Alphaproteobacteria
Methylobacterium sp. DB0501 [JAAKGV]
53977
54068
+
Ser
GCT
[ENA]
¡û
>W2011281790
QOWC01000160
Alphaproteobacteria
Methylobacterium sp. MIMD6 [QOWC]
2724
2815
+
Ser
GCT
[ENA]
¡û
>W2011522240
SACP01000020
Alphaproteobacteria
Methylobacterium sp. TER-1 [SACP]
104918
105009
+
Ser
GCT
[ENA]
¡û
>W2011621830
SLWL01000010
Alphaproteobacteria
Camelimonas lactis DSM 22958 [SLWL]
161691
161782
+
Ser
GCT
[ENA]
¡û
>W2011678504
SRLB01000016
Alphaproteobacteria
Methylobacterium sp. 6HR-1 [SRLB]
158467
158558
+
Ser
GCT
[ENA]
¡û
>W2011980808
VDDA01000025
Alphaproteobacteria
Methylobacterium sp. 17Sr1-39 [VDDA]
55304
55395
+
Ser
GCT
[ENA]
¡û
>W2012126878
VRUZ01000036
Alphaproteobacteria
Methylobacterium sp. WL69 [VRUZ]
37494
37403
-
Ser
GCT
[ENA]
¡û
>W2012126929
VRVA01000036
Alphaproteobacteria
Methylobacterium sp. WL64 [VRVA]
6428
6519
+
Ser
GCT
[ENA]
¡û
>W2012127068
VRVD01000140
Alphaproteobacteria
Methylobacterium sp. WL18 [VRVD]
6973
6882
-
Ser
GCT
[ENA]
¡û
>W2012127327
VRVI01000091
Alphaproteobacteria
Methylobacterium sp. WL2 [VRVI]
2402
2311
-
Ser
GCT
[ENA]
¡û
>W2012221234
VZZJ01000004
Alphaproteobacteria
Methylobacterium sp. YIM 132548 [VZZJ]
55571
55480
-
Ser
GCT
[ENA]
¡û
>W2012221289
VZZK01000014
Alphaproteobacteria
Methylobacterium soli YIM 48816 [VZZK]
93783
93692
-
Ser
GCT
[ENA]
¡û
>W2110023730
BMGG01000005
Alphaproteobacteria
Chelatococcus reniformis CGMCC 1.12919 [BMGG]
142210
142119
-
Ser
GCT
[ENA]
¡û
>W2110054259
BNCG01000001
Alphaproteobacteria
Camelimonas fluminis KCTC 42282 [BNCG]
761254
761345
+
Ser
GCT
[ENA]
¡û
>W2110157068
JAAQRC010000001
Alphaproteobacteria
Methylobacterium sp. SyP6R [JAAQRC]
824135
824044
-
Ser
GCT
[ENA]
¡û
>W2110278867
JACWCT010000185
Alphaproteobacteria
Methylobacterium ajmalii IF7SW-B2 [JACWCT]
30121
30030
-
Ser
GCT
[ENA]
¡û
>W2110278889
JACWCU010000059
Alphaproteobacteria
Methylobacterium ajmalii IIF1SW-B5 [JACWCU]
30201
30110
-
Ser
GCT
[ENA]
¡û
>W2110278957
JACWCV010000885
Alphaproteobacteria
Methylobacterium ajmalii IIF4SW-B5 [JACWCV]
253
344
+
Ser
GCT
[ENA]
¡û
>C201116459
CP042823
Alphaproteobacteria
Methylobacterium sp. WL1 [CP042823]
5235458
5235367
-
Ser
GCT
-
¡û
>C211014912
AP024145
Alphaproteobacteria
Methylobacterium indicum VL1 [AP024145]
1523408
1523499
+
Ser
GCT
-
¡û
>C211060175
CP043627
Alphaproteobacteria
Methylobacterium aquaticum BG2 [CP043627]
314051
314142
+
Ser
GCT
-
¡û
>C231259822
CP089295
Alphaproteobacteria
Methylobacterium currus TP-3 [CP089295, CP089296]
2768959
2769050
+
Ser
GCT
-
¡û
>C231642868
CP121700
Alphaproteobacteria
Methylobacterium indicum JDJ13 [CP121700]
4393775
4393684
-
Ser
GCT
-
¡û
>W2310012935
BPQH01000015
Alphaproteobacteria
Methylobacterium crusticola KCTC 52305 [BPQH]
20878
20969
+
Ser
GCT
[ENA]
¡û
>W2310013007
BPQJ01000005
Alphaproteobacteria
Methylobacterium frigidaeris JCM 32048 [BPQJ]
258510
258419
-
Ser
GCT
[ENA]
¡û
>W2310013364
BPQQ01000075
Alphaproteobacteria
Methylobacterium isbiliense DSM 17168 [BPQQ]
54207
54298
+
Ser
GCT
[ENA]
¡û
>W2310013478
BPQT01000015
Alphaproteobacteria
Methylobacterium marchantiae DSM 21328 [BPQT]
174011
174102
+
Ser
GCT
[ENA]
¡û
>W2310013540
BPQU01000016
Alphaproteobacteria
Methylobacterium mesophilicum NBRC 15688 [BPQU]
22059
21968
-
Ser
GCT
[ENA]
¡û
>W2310013709
BPQY01000200
Alphaproteobacteria
Methylobacterium soli KCTC 22810 [BPQY]
2083
1992
-
Ser
GCT
[ENA]
¡û
>W1511400908
JTHF01000223
Alphaproteobacteria
Methylobacterium indicum SE2.11 [JTHF]
20359
20268
-
Ser
GCT
[ENA]
¡û
>W1511400948
JTHG01000117
Alphaproteobacteria
Methylobacterium indicum SE3.6 [JTHG]
9151
9242
+
Ser
GCT
[ENA]
¡û
>W1511507916
JXOD01000369
Alphaproteobacteria
Methylobacterium platani JCM 14648 [JXOD]
5682
5773
+
Ser
GCT
[ENA]
¡û
>W1511563234
LABX01000050
Alphaproteobacteria
Methylobacterium aquaticum DSM 16371 [LABX]
12005
12096
+
Ser
GCT
[ENA]
¡û
>W1511563285
LABY01000004
Alphaproteobacteria
Methylobacterium variabile DSM 16961 [LABY]
34680
34589
-
Ser
GCT
[ENA]
¡û
>W1511563362
LABZ01000120
Alphaproteobacteria
Methylobacterium tarhaniae DSM 25844 [LABZ]
2197
2106
-
Ser
GCT
[ENA]
¡û
>C161001120
AP014704
Alphaproteobacteria
Methylobacterium aquaticum MA-22A [AP014704]
30131
30222
+
Ser
GCT
[Ensembl]
¡û
>W1610047427
BBDG01002027
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
166
257
+
Ser
GCT
[ENA]
¡û
>W121081141
AKFK01000084
Alphaproteobacteria
Methylobacterium sp. GXF4 [AKFK]
41136
41227
+
Ser
GCT
[ENA]
¡û
>W1610590436
LDRL01000109
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
20269
20178
-
Ser
GCT
[ENA]
¡û
>W1610590496
LDRM01000071
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
20320
20229
-
Ser
GCT
[ENA]
¡û
>W1610590572
LDRN01000096
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
20379
20288
-
Ser
GCT
[ENA]
¡û
>W1610679895
LKKO01000021
Alphaproteobacteria
Methylobacterium sp. GXS13 [LKKO]
61993
61902
-
Ser
GCT
[ENA]
¡û
>W1610735057
LMME01000023
Alphaproteobacteria
Methylobacterium sp. Leaf85 [LMME]
300090
299999
-
Ser
GCT
[ENA]
¡û
>W1610735129
LMMG01000021
Alphaproteobacteria
Methylobacterium sp. Leaf86 [LMMG]
239008
238917
-
Ser
GCT
[ENA]
¡û
>W1610735362
LMML01000029
Alphaproteobacteria
Methylobacterium sp. Leaf89 [LMML]
932538
932447
-
Ser
GCT
[ENA]
¡û
>W1610735712
LMMS01000026
Alphaproteobacteria
Methylobacterium sp. Leaf93 [LMMS]
215185
215276
+
Ser
GCT
[ENA]
¡û
>W1610736042
LMMZ01000034
Alphaproteobacteria
Methylobacterium sp. Leaf104 [LMMZ]
26601
26692
+
Ser
GCT
[ENA]
¡û
>W1610736259
LMNE01000003
Alphaproteobacteria
Methylobacterium sp. Leaf111 [LMNE]
18832
18741
-
Ser
GCT
[ENA]
¡û
>W1610736364
LMNG01000017
Alphaproteobacteria
Methylobacterium sp. Leaf112 [LMNG]
26278
26369
+
Ser
GCT
[ENA]
¡û
>W1610736579
LMNL01000001
Alphaproteobacteria
Methylobacterium sp. Leaf117 [LMNL]
392491
392582
+
Ser
GCT
[ENA]
¡û
>W1610736997
LMNU01000012
Alphaproteobacteria
Methylobacterium sp. Leaf125 [LMNU]
701074
700983
-
Ser
GCT
[ENA]
¡û
>W1610741524
LMRM01000006
Alphaproteobacteria
Methylobacterium sp. Leaf94 [LMRM]
95351
95442
+
Ser
GCT
[ENA]
¡û
>W1610987328
LWHQ01000026
Alphaproteobacteria
Methylobacterium platani [LWHQ]
54702
54793
+
Ser
GCT
[ENA]
¡û
>W1710044032
BBDG01002027
Alphaproteobacteria
Methylobacterium platani JCM 14648 [BBDG]
166
257
+
Ser
GCT
[ENA]
¡û
>W1710548815
FOEB01000007
Alphaproteobacteria
Methylobacterium sp. ap11 [FOEB]
288254
288163
-
Ser
GCT
[ENA]
¡û
>W1710560705
FONO01000045
Alphaproteobacteria
Methylobacterium sp. yr596 [FONO]
30358
30267
-
Ser
GCT
[ENA]
¡û
>W1710568240
FOTK01000019
Alphaproteobacteria
Methylobacterium pseudosasicola [FOTK]
5216
5125
-
Ser
GCT
[ENA]
¡û
>W1710579072
FPCB01000039
Alphaproteobacteria
Methylobacterium sp. 174MFSha1.1 [FPCB]
53009
53100
+
Ser
GCT
[ENA]
¡û
>W1710709716
LDRL01000109
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRL]
20269
20178
-
Ser
GCT
[ENA]
¡û
>W1710709776
LDRM01000071
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRM]
20320
20229
-
Ser
GCT
[ENA]
¡û
>W1710709852
LDRN01000096
Alphaproteobacteria
Methylobacterium indicum aquaticum [LDRN]
20379
20288
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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