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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.129113 (14 seq.)
>W131182123
ARQC01000353
Rhodothermota
Salinibacter sp. J07SB67 [ARQC]
803
878
+
Asp
GTC
[ENA]
¡û
>C024127
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
2342963
2342889
-
Asp
GTC
[Ensembl]
¡û
>WENV170008789
APHM01005926
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
462
387
-
Asp
GTC
[ENA]
¢þ
>C181192116
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
2380163
2380088
-
Asp
GTC
-
¡û
>C191072380
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
2368883
2368808
-
Asp
GTC
-
¡û
>C191072424
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
2356191
2356116
-
Asp
GTC
-
¡û
>C191072470
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
2458105
2458030
-
Asp
GTC
-
¡û
>C191072514
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
2340098
2340023
-
Asp
GTC
-
¡û
>C191072559
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
2401087
2401012
-
Asp
GTC
-
¡û
>W1910870051
NCQX01000040
Rhodothermota
Salinibacter ruber SP273 [NCQX]
390
315
-
Asp
GTC
[ENA]
¡û
>W1910870088
NCQY01000013
Rhodothermota
Salinibacter altiplanensis AN15 [NCQY]
32820
32895
+
Asp
GTC
[ENA]
¡û
>W1910870115
NCQZ01000005
Rhodothermota
Salinibacter altiplanensis LL19 [NCQZ]
49113
49188
+
Asp
GTC
[ENA]
¡û
>W1910870191
NCRA01000024
Rhodothermota
Salinibacter altiplanensis AN4 [NCRA]
7889
7814
-
Asp
GTC
[ENA]
¡û
>C131018246
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
2420375
2420300
-
Asp
GTC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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