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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.130083 (99 seq.)
>W1711179138
LWHJ01000028
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
67007
67084
+
Val
TAC
[ENA]
¡û
>W1711392042
MENE01000036
Bacteroidota
Bacteroidetes bacterium GWA2_31_9b [MENE]
2812
2735
-
Val
TAC
[ENA]
¡û
>W1711392120
MENG01000010
Bacteroidota
Bacteroidetes bacterium GWA2_33_15 [MENG]
122388
122311
-
Val
TAC
[ENA]
¡û
>W1711392273
MENK01000008
Bacteroidota
Bacteroidetes bacterium GWB2_32_14 [MENK]
235629
235552
-
Val
TAC
[ENA]
¡û
>W1711392416
MENN01000032
Bacteroidota
Bacteroidetes bacterium GWC2_33_15 [MENN]
99930
99853
-
Val
TAC
[ENA]
¡û
>W1711392554
MENR01000026
Bacteroidota
Bacteroidetes bacterium GWD2_33_33 [MENR]
89196
89273
+
Val
TAC
[ENA]
¡û
>W1711392705
MENV01000034
Bacteroidota
Bacteroidetes bacterium GWE2_32_14 [MENV]
85681
85604
-
Val
TAC
[ENA]
¡û
>W1711393009
MEOE01000006
Bacteroidota
Bacteroidetes bacterium GWF2_33_16 [MEOE]
45265
45342
+
Val
TAC
[ENA]
¡û
>C171057662
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
2896219
2896142
-
Val
TAC
-
¡û
>C171057663
CP017141
Bacteroidota
Pedobacter steynii DX4 [CP017141]
2896081
2896004
-
Val
TAC
-
¡û
>W131145925
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
1409036
1408959
-
Val
TAC
[ENA]
¡û
>W131145926
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
1408913
1408836
-
Val
TAC
[ENA]
¡û
>W131165405
ARBN01000027
Bacteroidota
Cytophaga aurantiaca DSM 3654 [ARBN]
301
224
-
Val
TAC
[ENA]
¡û
>W131228401
AUFX01000004
Bacteroidota
Sporocytophaga myxococcoides DSM 11118 [AUFX]
15127
15202
+
Val
TAC
[ENA]
¡û
>W131228402
AUFX01000004
Bacteroidota
Sporocytophaga myxococcoides DSM 11118 [AUFX]
15321
15396
+
Val
TAC
[ENA]
¡û
>W131229751
AUHA01000002
Bacteroidota
Daejeonella oryzae DSM 19973 [AUHA]
1360269
1360346
+
Val
TAC
[ENA]
¡û
>W131235012
AULF01000024
Bacteroidota
Pedobacter glucosidilyticus DSM 23534 [AULF]
61291
61366
+
Val
TAC
[ENA]
¡û
>C005837
CP000383
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 [CP000383]
256242
256319
+
Val
TAC
[Ensembl]
¡û
>w027783
ABCM01000004
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
13407
13484
+
Val
TAC
[ENA]
¡û
>w027782
ABCM01000004
Bacteroidota
Pedobacter sp. BAL39 [ABCM]
13292
13369
+
Val
TAC
[ENA]
¡û
>WENV180095566
MTBK01074992
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
182
257
+
Val
TAC
[ENA]
¢þ
>WENV180095805
MTBK01090483
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
277
352
+
Val
TAC
[ENA]
¢þ
>WENV180296196
OBJA01000044
[OBJA] soil metagenome; sediment, water from around vicinity
123956
123879
-
Val
TAC
[ENA]
¢þ
>W141027935
AKZJ01000010
Bacteroidota
Pedobacter arcticus A12 [AKZJ]
290602
290679
+
Val
TAC
[ENA]
¡û
>WENV181172949
OEIV011093996
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
64
141
+
Val
TAC
[ENA]
¢þ
>WENV183512284
OMKS01000221
[OMKS] sediment metagenome; hot spring sediment
52253
52328
+
Val
TAC
[ENA]
¢þ
>WENV183512795
OMKS01001373
[OMKS] sediment metagenome; hot spring sediment
21274
21351
+
Val
TAC
[ENA]
¢þ
>WENV183734074
PJTZ01000040
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
121455
121530
+
Val
TAC
[ENA]
¢þ
>WENV183734091
PJTZ01000048
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
32775
32850
+
Val
TAC
[ENA]
¢þ
>WENV183737578
PJUD01016140
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1514
1439
-
Val
TAC
[ENA]
¢þ
>WENV183743554
PJUJ01005615
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1377
1454
+
Val
TAC
[ENA]
¢þ
>WENV183743557
PJUJ01006144
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
1368
1291
-
Val
TAC
[ENA]
¢þ
>WENV170006047
AMQJ01017609
[AMQJ] sediment metagenome; subsurface aquifer sediment
1260
1337
+
Val
TAC
[ENA]
¢þ
>WENV170642623
JFJP01042483
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2329
2252
-
Val
TAC
[ENA]
¢þ
>WENV170647567
JQIA01036441
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
1012
935
-
Val
TAC
[ENA]
¢þ
>WENV170654028
JRYK01003488
[JRYK] activated sludge metagenome; activated biomass of a wastewaster treatment plant treating hydrocarbon contaminated
4366
4443
+
Val
TAC
[ENA]
¢þ
>W09109595
ABUJ01000004
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
214946
214869
-
Val
TAC
[ENA]
¡û
>W09109596
ABUJ01000004
Bacteroidota
Pedobacter heparinus DSM 2366 [ABUJ]
214823
214746
-
Val
TAC
[ENA]
¡û
>WENV170973792
MTKY01051023
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
17425
17350
-
Val
TAC
[ENA]
¢þ
>C181094362
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
4943697
4943620
-
Val
TAC
-
¡û
>C181094363
CP024091
Bacteroidota
Pedobacter ginsengisoli T01R-27 [CP024091]
4943538
4943461
-
Val
TAC
-
¡û
>C191226422
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
472981
473058
+
Val
TAC
-
¡û
>C191226423
LS999839
Bacteroidota
Pedobacter schmidteae eg [LS999839]
473106
473183
+
Val
TAC
-
¡û
>W141727614
JNFF01000014
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
17339
17416
+
Val
TAC
[ENA]
¡û
>W141727615
JNFF01000014
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
17489
17566
+
Val
TAC
[ENA]
¡û
>W1910237060
FPJX01000001
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 DSM 1761 [FPJX]
68295
68372
+
Val
TAC
[ENA]
¡û
>W1910377938
FUKU01000037
Bacteroidota
Sphingobacterium sp. JB170 [FUKU]
6084
6007
-
Val
TAC
[ENA]
¡û
>W1910664179
MBTA01000005
Bacteroidota
Pelobium manganitolerans YS-25 [MBTA]
155763
155686
-
Val
TAC
[ENA]
¡û
>W1910698691
MEOY01001238
Bacteroidota
Bacteroidetes bacterium RIFCSPHIGHO2_02_FULL_44_7 [MEOY]
4463
4388
-
Val
TAC
[ENA]
¡û
>C09108577
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
545827
545750
-
Val
TAC
[Ensembl]
¡û
>C09108578
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
545704
545627
-
Val
TAC
[Ensembl]
¡û
>W1911385568
NVQB01000001
Bacteroidota
Sphingobacteriaceae bacterium SH-48 [NVQB]
758571
758646
+
Val
TAC
[ENA]
¡û
>W1911647388
QAJL01000002
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
711699
711774
+
Val
TAC
[ENA]
¡û
>W1911647389
QAJL01000002
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
711850
711925
+
Val
TAC
[ENA]
¡û
>W1810265829
PQVF01000014
Bacteroidota
Solitalea longa HR-AV [PQVF]
23357
23432
+
Val
TAC
[ENA]
¡û
>W1810265830
PQVF01000014
Bacteroidota
Solitalea longa HR-AV [PQVF]
23456
23531
+
Val
TAC
[ENA]
¡û
>W1810296315
PTJF01000005
Bacteroidota
Parapedobacter indicus RK1 [PTJF]
346598
346523
-
Val
TAC
[ENA]
¡û
>W1810346504
PVBQ01000018
Bacteroidota
Sphingobacterium haloxyli 5JN-11 [PVBQ]
82574
82649
+
Val
TAC
[ENA]
¡û
>W1810346608
PVBS01000006
Bacteroidota
Sphingobacterium gobiense ACCC 05757 [PVBS]
90380
90455
+
Val
TAC
[ENA]
¡û
>W1810405004
PYLS01000004
Bacteroidota
Pedobacter yulinensis YL28-9 [PYLS]
318213
318290
+
Val
TAC
[ENA]
¡û
>W1810474665
QAIL01000453
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
18898
18823
-
Val
TAC
[ENA]
¡û
>W1810474666
QAIL01000453
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
18776
18701
-
Val
TAC
[ENA]
¡û
>W1810503907
QBKM01000002
Bacteroidota
Pedobacter sp. YR016 [QBKM]
731147
731070
-
Val
TAC
[ENA]
¡û
>W1810503908
QBKM01000002
Bacteroidota
Pedobacter sp. YR016 [QBKM]
730993
730916
-
Val
TAC
[ENA]
¡û
>W1810676163
QKLU01000008
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
146593
146516
-
Val
TAC
[ENA]
¡û
>W1810676164
QKLU01000008
Bacteroidota
Pedobacter nutrimenti DSM 27372 [QKLU]
146482
146407
-
Val
TAC
[ENA]
¡û
>W1810693890
QLLR01000010
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
406
331
-
Val
TAC
[ENA]
¡û
>W1810693891
QLLR01000010
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
289
214
-
Val
TAC
[ENA]
¡û
>W1510010446
BBLT01000003
Bacteroidota
Sporocytophaga myxococcoides PG-01 [BBLT]
580250
580175
-
Val
TAC
[ENA]
¡û
>W1511509420
JXRA01000042
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
27481
27404
-
Val
TAC
[ENA]
¡û
>W1511509421
JXRA01000042
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
27328
27253
-
Val
TAC
[ENA]
¡û
>C121011515
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
3898117
3898040
-
Val
TAC
[Ensembl]
¡û
>C121011516
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
3897980
3897903
-
Val
TAC
[Ensembl]
¡û
>C121011517
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
3897881
3897806
-
Val
TAC
[Ensembl]
¡û
>C161073008
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
4409758
4409835
+
Val
TAC
[Ensembl]
¡û
>C161073009
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
4409876
4409953
+
Val
TAC
[Ensembl]
¡û
>W121017847
AGSC01000041
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
221498
221575
+
Val
TAC
[ENA]
¡û
>W121017848
AGSC01000041
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
221635
221712
+
Val
TAC
[ENA]
¡û
>W121017849
AGSC01000041
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
221734
221809
+
Val
TAC
[ENA]
¡û
>W1610612133
LGEL01000065
Bacteroidota
Pedobacter panaciterrae [LGEL]
4575
4652
+
Val
TAC
[ENA]
¡û
>W1610612134
LGEL01000065
Bacteroidota
Pedobacter panaciterrae [LGEL]
4728
4805
+
Val
TAC
[ENA]
¡û
>W1610987090
LWHJ01000028
Bacteroidota
Pedobacter psychrophilus CCM 8644 [LWHJ]
67007
67084
+
Val
TAC
[ENA]
¡û
>W1710522115
FNGY01000018
Bacteroidota
Pedobacter steynii [FNGY]
22911
22988
+
Val
TAC
[ENA]
¡û
>W1710522116
FNGY01000018
Bacteroidota
Pedobacter steynii [FNGY]
23062
23139
+
Val
TAC
[ENA]
¡û
>W1710522142
FNGZ01000003
Bacteroidota
Pedobacter antarcticus [FNGZ]
257065
256988
-
Val
TAC
[ENA]
¡û
>W1710522143
FNGZ01000003
Bacteroidota
Pedobacter antarcticus [FNGZ]
256918
256841
-
Val
TAC
[ENA]
¡û
>W1710522593
FNHH01000046
Bacteroidota
Daejeonella rubra ruber [FNHH]
4172
4247
+
Val
TAC
[ENA]
¡û
>W1710533285
FNRA01000002
Bacteroidota
Pedobacter hartonius [FNRA]
213212
213289
+
Val
TAC
[ENA]
¡û
>W1710533286
FNRA01000002
Bacteroidota
Pedobacter hartonius [FNRA]
218633
218708
+
Val
TAC
[ENA]
¡û
>W1710543140
FNZR01000010
Bacteroidota
Parapedobacter koreensis [FNZR]
85034
84959
-
Val
TAC
[ENA]
¡û
>W1710564536
FOQO01000005
Bacteroidota
Parapedobacter indicus [FOQO]
346401
346324
-
Val
TAC
[ENA]
¡û
>W1710576378
FOZZ01000004
Bacteroidota
Sphingobacterium wenxiniae [FOZZ]
396
319
-
Val
TAC
[ENA]
¡û
>W1710583254
FQUQ01000003
Bacteroidota
Pedobacter caeni [FQUQ]
408486
408409
-
Val
TAC
[ENA]
¡û
>W1710583255
FQUQ01000003
Bacteroidota
Pedobacter caeni [FQUQ]
408335
408258
-
Val
TAC
[ENA]
¡û
>W1710602982
FUYR01000002
Bacteroidota
Daejeonella lutea luteus [FUYR]
203333
203408
+
Val
TAC
[ENA]
¡û
>W1710606344
FWXT01000001
Bacteroidota
Pedobacter africanus [FWXT]
1857605
1857682
+
Val
TAC
[ENA]
¡û
>W1710606345
FWXT01000001
Bacteroidota
Pedobacter africanus [FWXT]
1857728
1857805
+
Val
TAC
[ENA]
¡û
>W1710733639
LGEL01000065
Bacteroidota
Pedobacter panaciterrae [LGEL]
4575
4652
+
Val
TAC
[ENA]
¡û
>W1710733640
LGEL01000065
Bacteroidota
Pedobacter panaciterrae [LGEL]
4728
4805
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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