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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13081 (37 seq.)
>W131099654
AOTL01000006
Gammaproteobacteria
Methylotuvimicrobium buryatense 5G [AOTL]
367732
367641
-
Ser
GCT
[ENA]
¡û
>W131163535
AQZU01000003
Gammaproteobacteria
Methylovulum miyakonense HT12 [AQZU]
145874
145783
-
Ser
GCT
[ENA]
¡û
>W1711632625
MPSY01000107
Gammaproteobacteria
Methylococcales bacterium OPU3_GD_OMZ [MPSY]
5647
5738
+
Ser
GCT
[ENA]
¡û
>W141187105
AYLO01000091
Gammaproteobacteria
Methyloglobulus morosus KoM1 [AYLO]
13184
13275
+
Ser
GCT
[ENA]
¡û
>WENV182579725
OJGT01000029
[OJGT] seawater metagenome; Sea water
14378
14287
-
Ser
GCT
[ENA]
¡û
>WENV182580300
OJGV01000256
[OJGV] seawater metagenome; Sea water
1623
1714
+
Ser
GCT
[ENA]
¡û
>WENV182585535
OJHI01000001
[OJHI] seawater metagenome; Sea water
471402
471493
+
Ser
GCT
[ENA]
¡û
>WENV182590577
OJIJ01000015
[OJIJ] seawater metagenome; Sea water
12280
12189
-
Ser
GCT
[ENA]
¡û
>WENV183055706
OLHF01000148
[OLHF] seawater metagenome; Sea water
95
4
-
Ser
GCT
[ENA]
¡û
>WENV183522259
OMOM01001470
[OMOM] seawater metagenome; Sea water
3820
3911
+
Ser
GCT
[ENA]
¡û
>WENV183661531
ORJL010116373
[ORJL] groundwater metagenome; groundwater
66237
66328
+
Ser
GCT
[ENA]
¡û
>WENV183675112
ORJL011473582
[ORJL] groundwater metagenome; groundwater
208
117
-
Ser
GCT
[ENA]
¡û
>WENV170300652
CESG01139438
[CESG] marine metagenome genome assembly TARA_078_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
4951
5042
+
Ser
GCT
[ENA]
¡û
>WENV170555977
CXWL01003591
[CXWL] groundwater metagenome; biofilm material
93
2
-
Ser
GCT
[ENA]
¡û
>WENV170610107
FUWD011684432
[FUWD] metagenome; unknown
10
101
+
Ser
GCT
[ENA]
¡û
>WENV170646799
JQIA01003432
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
4874
4783
-
Ser
GCT
[ENA]
¡û
>WENV170783344
MAAC01016150
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
11493
11584
+
Ser
GCT
[ENA]
¡û
>C181059045
CP022129
Gammaproteobacteria
Methylovulum psychrotolerans HV10_M2 [CP022129]
1999229
1999138
-
Ser
GCT
-
¡û
>C181088386
CP023664
Gammaproteobacteria
Cycloclasticus sp. PY97N [CP023664]
1703129
1703038
-
Ser
GCT
-
¡û
>C191000833
AP018005
Gammaproteobacteria
Candidatus Rickettsiella viridis Ap-RA04 [AP018005]
352085
352176
+
Ser
GCT
-
¡û
>W141817435
JQKS01000004
Gammaproteobacteria
Methylobacter sp. BBA5.1 [JQKS]
29862
29771
-
Ser
GCT
[ENA]
¡û
>W1910377350
FUKI01000126
Gammaproteobacteria
Crenothrix polyspora [FUKI]
103050
103141
+
Ser
GCT
[ENA]
¡û
>C141004305
CP005996
Gammaproteobacteria
Cycloclasticus zancles 78-ME [CP005996]
1727514
1727423
-
Ser
GCT
[Ensembl]
¡û
>W1810090406
PGFZ01000007
Gammaproteobacteria
Methylovulum psychrotolerans Sph1 [PGFZ]
218572
218481
-
Ser
GCT
[ENA]
¡û
>W2010347814
CADCXN010000112
Gammaproteobacteria
Methylobacter sp. B2 [CADCXN]
590
681
+
Ser
GCT
[ENA]
¡û
>W2010402317
FUKI01000126
Gammaproteobacteria
Crenothrix polyspora [FUKI]
103050
103141
+
Ser
GCT
[ENA]
¡û
>W2012309030
WEIF01000018
Gammaproteobacteria
Alkalilimnicola sp. S0819 [WEIF]
19710
19801
+
Ser
GCT
[ENA]
¡û
>W2012325863
WHIW01000018
Gammaproteobacteria
Alkalilimnicola sp. S0819 [WHIW]
19710
19801
+
Ser
GCT
[ENA]
¡û
>W2110576243
JAGVVN010000001
Gammaproteobacteria
Methylovulum psychrotolerans S1L [JAGVVN]
997442
997351
-
Ser
GCT
[ENA]
¡û
>C211365182
CP079094
Gammaproteobacteria
Rickettsiella endosymbiont of Dermanyssus gallinae [CP079094]
1448746
1448655
-
Ser
GCT
-
¡û
>C231145816
CP076024
Gammaproteobacteria
Methylobacter sp. S3L5C [CP076024]
2557913
2558004
+
Ser
GCT
-
¡û
>W2110752386
NHSQ01000132
Gammaproteobacteria
Thiocystis minor DSM 178 [NHSQ]
4411
4320
-
Ser
GCT
[ENA]
¡û
>W11178620
AGFC01000030
Gammaproteobacteria
Thiocystis violascens DSM 198 [AGFC]
22728
22819
+
Ser
GCT
[ENA]
¡û
>C121007028
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
808031
807940
-
Ser
GCT
[Ensembl]
¡û
>W1610917216
LSMQ01000025
Gammaproteobacteria
Cycloclasticus sp. Phe_18 [LSMQ]
5113
5022
-
Ser
GCT
[ENA]
¡û
>W1610917218
LSMQ01000044
Gammaproteobacteria
Cycloclasticus sp. Phe_18 [LSMQ]
7
98
+
Ser
GCT
[ENA]
¡û
>W1710508434
FMWD01000001
Gammaproteobacteria
Thiohalomonas denitrificans [FMWD]
250527
250436
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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