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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
|
BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.131282 (28 seq.)
>W1711284801
LZRN01000007
Bacteroidota
Gelidibacter algens [LZRN]
105513
105431
-
Leu
CAA
[ENA]
¡û
>WENV180038700
LLBY010002399
[LLBY] soil metagenome; soil from tomato rhizosphere
38747
38827
+
Leu
CAA
[ENA]
¡û
>WENV180040944
LLBZ010026578
[LLBZ] soil metagenome; soil from tomato rhizosphere
30283
30203
-
Leu
CAA
[ENA]
¡û
>WENV183056710
OLHJ01005768
[OLHJ] seawater metagenome; Sea water
976
1056
+
Leu
CAA
[ENA]
¡û
>WENV170015810
AZII01011409
[AZII] marine sediment metagenome; enrichment culture of sample MGS-BIZ(AMM) from oil contaminated site at the Bizerte
116
34
-
Leu
CAA
[ENA]
¡û
>WENV170266712
CERE01103504
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
29
111
+
Leu
CAA
[ENA]
¡û
>WENV170991738
MWWA01304381
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
148
66
-
Leu
CAA
[ENA]
¡û
>C181113310
CP025117
Bacteroidota
Olleya sp. Bg11-27 [CP025117]
1174715
1174795
+
Leu
CAA
-
¡û
>C191023109
CP022985
Bacteroidota
Mariniflexile sp. TRM1-10 [CP022985]
2055061
2054981
-
Leu
CAA
-
¡û
>C191166174
CP039451
Bacteroidota
Psychroserpens sp. NJDZ02 [CP039451]
1148849
1148769
-
Leu
CAA
-
¡û
>W1810157349
PJBW01000058
Bacteroidota
Olleya sp. 1-3 [PJBW]
503897
503817
-
Leu
CAA
[ENA]
¡û
>W1810161367
PJEO01000016
Bacteroidota
Confluentibacter flavum 3B [PJEO]
117852
117932
+
Leu
CAA
[ENA]
¡û
>W1810385477
PXOQ01000007
Bacteroidota
Aurantibacter aestuarii KCTC 32269 [PXOQ]
107720
107800
+
Leu
CAA
[ENA]
¡û
>C151018409
CP007202
Bacteroidota
Siansivirga zeaxanthinifaciens CC-SAMT-1 [CP007202]
955082
955164
+
Leu
CAA
[Ensembl]
¡û
>W2010092977
BJKB01000007
Bacteroidota
Gelidibacter sp. Bio7-1 [BJKB]
21049
21129
+
Leu
CAA
[ENA]
¡û
>W2011618966
SLUP01000009
Bacteroidota
Mariniflexile fucanivorans DSM 18792 [SLUP]
94736
94816
+
Leu
CAA
[ENA]
¡û
>W2110277351
JACVXD010000002
Bacteroidota
Aestuariibaculum marinum IP7 [JACVXD]
23248
23328
+
Leu
CAA
[ENA]
¡û
>W2110556616
JAGJCB010000002
Bacteroidota
Mariniflexile gromovii KCTC 12570 [JAGJCB]
99671
99591
-
Leu
CAA
[ENA]
¡û
>C211062760
CP045067
Bacteroidota
Lacinutrix sp. WUR7 [CP045067]
1562535
1562615
+
Leu
CAA
-
¡û
>C211118195
CP058987
Bacteroidota
Olleya sp. HaHaR_3_96 [CP058987]
1164833
1164913
+
Leu
CAA
-
¡û
>C241306928
CP133090
Bacteroidota
Aestuariibaculum sp. YM273 [CP133090]
1538669
1538589
-
Leu
CAA
-
¡û
>W1511432824
JUGU01000001
Bacteroidota
Psychroserpens sp. Hel_I_66 [JUGU]
2612637
2612717
+
Leu
CAA
[ENA]
¡û
>W1511534153
JYNQ01000001
Bacteroidota
Lacinutrix sp. Hel_I_90 Hel_I_90 Hel_I _90 [JYNQ]
1920994
1920912
-
Leu
CAA
[ENA]
¡û
>W1610633015
LIQI01000022
Bacteroidota
Lacinutrix himadriensis [LIQI]
407428
407346
-
Leu
CAA
[ENA]
¡û
>W1611042586
LZRN01000007
Bacteroidota
Gelidibacter algens [LZRN]
105513
105431
-
Leu
CAA
[ENA]
¡û
>W1710532545
FNQK01000007
Bacteroidota
Bizionia paragorgiae [FNQK]
17652
17572
-
Leu
CAA
[ENA]
¡û
>W1710565801
FORM01000002
Bacteroidota
Olleya namhaensis [FORM]
492037
491955
-
Leu
CAA
[ENA]
¡û
>W1710767447
LIQI01000022
Bacteroidota
Lacinutrix himadriensis [LIQI]
407428
407346
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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