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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.132634 (37 seq.)
>W1710938653
LONE02000019
Gammaproteobacteria
Stutzerimonas balearica [LONE]
48227
48313
+
Leu
CAA
[ENA]
¡û
>W1710938678
LONF02000002
Gammaproteobacteria
Stutzerimonas balearica [LONF]
413073
413159
+
Leu
CAA
[ENA]
¡û
>W1711658228
MQMM01000016
Gammaproteobacteria
Stutzerimonas degradans stutzeri [MQMM]
68581
68667
+
Leu
CAA
[ENA]
¡û
>W131046452
AMSL01000044
Gammaproteobacteria
Stutzerimonas degradans Chol1 [AMSL]
47240
47326
+
Leu
CAA
[ENA]
¡û
>W131046457
AMSL01000069
Gammaproteobacteria
Stutzerimonas degradans Chol1 [AMSL]
49013
49099
+
Leu
CAA
[ENA]
¡û
>WENV170015275
AZIG01000130
[AZIG] marine sediment metagenome; enrichment culture of sample MGS-AQ(UA) from oil contaminated terminal site at a crude oil
450
536
+
Leu
CAA
[ENA]
¡û
>WENV170015885
AZIJ01002967
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
358
444
+
Leu
CAA
[ENA]
¡û
>WENV170656680
JTFO01032977
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
236
322
+
Leu
CAA
[ENA]
¡û
>WENV170658167
JTFP01064547
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
344
258
-
Leu
CAA
[ENA]
¡û
>WENV170707973
LNAP01042618
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2565
2479
-
Leu
CAA
[ENA]
¡û
>WENV170779401
LZQO01000002
[LZQO] oil field metagenome; sample BH-FW-10 from oil reservoir
66563
66649
+
Leu
CAA
[ENA]
¡û
>WENV170779611
LZQQ01000252
[LZQQ] oil field metagenome; sample BH-FW-20 from oil reservoir
3052
3138
+
Leu
CAA
[ENA]
¡û
>WENV170966679
MTEY01004328
[MTEY] soil metagenome; soil biostimulated with seedmeal as carbon source
85
-1
-
Leu
CAA
[ENA]
¡û
>C191177763
CP040460
Gammaproteobacteria
Stutzerimonas degradans PheN2 [CP040460]
455634
455548
-
Leu
CAA
-
¡û
>W1810224385
POUK01000001
Gammaproteobacteria
Stutzerimonas degradans DSM 50238 [POUK]
69171
69257
+
Leu
CAA
[ENA]
¡û
>C151026079
CP007511
Gammaproteobacteria
Stutzerimonas balearica DSM 6083 [CP007511]
1300071
1299985
-
Leu
CAA
[Ensembl]
¡û
>W2010521287
JAANMR010000009
Gammaproteobacteria
Pseudomonas stutzeri MM2020_2 [JAANMR]
68622
68708
+
Leu
CAA
[ENA]
¡û
>W2012399977
WNLS01000006
Gammaproteobacteria
Pseudomonas sp. JL972 [WNLS]
209190
209104
-
Leu
CAA
[ENA]
¡û
>C211213739
CP065721
Gammaproteobacteria
Pseudomonas stutzeri FDAARGOS_876 [CP065721]
1723693
1723779
+
Leu
CAA
-
¡û
>C211234571
CP067013
Gammaproteobacteria
Pseudomonas balearica FDAARGOS_1013 [CP067013]
1379485
1379571
+
Leu
CAA
-
¡û
>W1510015244
BBQQ01000004
Gammaproteobacteria
Stutzerimonas degradans KF716 [BBQQ]
337387
337301
-
Leu
CAA
[ENA]
¡û
>C231081660
CP058908
Gammaproteobacteria
Pseudomonas phenolilytica RBPA9 [CP058908]
2308170
2308084
-
Leu
CAA
-
¡û
>C231151624
CP076348
Gammaproteobacteria
Stutzerimonas stutzeri DN36 [CP076348]
1324724
1324638
-
Leu
CAA
-
¡û
>W2110761885
QXMO01000009
Gammaproteobacteria
Pseudomonas balearica Z8 [QXMO]
13000
12914
-
Leu
CAA
[ENA]
¡û
>W2110762334
RAXS01000004
Gammaproteobacteria
Pseudomonas balearica SAGV3-2SA2 [RAXS]
164043
163957
-
Leu
CAA
[ENA]
¡û
>C231527591
CP110110
Gammaproteobacteria
Stutzerimonas balearica Z8 [CP110110]
1262329
1262243
-
Leu
CAA
-
¡û
>W2110781794
WIFQ01000002
Gammaproteobacteria
Pseudomonas balearica KOL14.W25.495.49 [WIFQ]
229487
229401
-
Leu
CAA
[ENA]
¡û
>W2110782085
WIFZ01000002
Gammaproteobacteria
Pseudomonas balearica KOL14.W.20.10 [WIFZ]
1276018
1275932
-
Leu
CAA
[ENA]
¡û
>W2110782238
WIGF01000002
Gammaproteobacteria
Pseudomonas balearica KOL14.W25.495.B5 [WIGF]
229029
228943
-
Leu
CAA
[ENA]
¡û
>C241102639
CP045858
Gammaproteobacteria
Stutzerimonas balearica EC28 [CP045858]
3847722
3847808
+
Leu
CAA
-
¡û
>C241110860
CP046538
Gammaproteobacteria
Stutzerimonas degradans XL272 [CP046538]
3485307
3485221
-
Leu
CAA
-
¡û
>W1511187048
JMFZ01000004
Gammaproteobacteria
Stutzerimonas degradans HMP271 [JMFZ]
428096
428010
-
Leu
CAA
[ENA]
¡û
>W1511429753
JUDR01000005
Gammaproteobacteria
Stutzerimonas stutzeri YC-YH1 [JUDR]
386463
386549
+
Leu
CAA
[ENA]
¡û
>W121070587
AJXE01000007
Gammaproteobacteria
Stutzerimonas stutzeri TS44 [AJXE]
91767
91681
-
Leu
CAA
[ENA]
¡û
>W1610794753
LONE01000017
Gammaproteobacteria
Stutzerimonas balearica [LONE]
48227
48313
+
Leu
CAA
[ENA]
¡û
>W1610794819
LONF01000023
Gammaproteobacteria
Stutzerimonas balearica [LONF]
413073
413159
+
Leu
CAA
[ENA]
¡û
>W1710522937
FNHO01000004
Gammaproteobacteria
Stutzerimonas balearica DSM 6083 [FNHO]
373672
373758
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK