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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13454 (45 seq.)
>W131016730
AISM01000012
Bacillota
Enterococcus hirae 2006-70-121 [AISM]
134331
134241
-
Ser
GGA
[ENA]
¡û
>W131027401
AJAI01000012
Bacillota
Enterococcus hirae ATCC 9790 [AJAI]
5207
5297
+
Ser
GGA
[ENA]
¡û
>W131201253
ASVZ01000001
Bacillota
Enterococcus hirae ATCC 9790 [ASVZ]
1432315
1432225
-
Ser
GGA
[ENA]
¡û
>W1711459340
MJDN01000001
Bacillota
Enterococcus hirae [MJDN]
502919
502829
-
Ser
GGA
[ENA]
¡û
>W1711459439
MJDO01000027
Bacillota
Enterococcus hirae [MJDO]
307
397
+
Ser
GGA
[ENA]
¡û
>W1711459459
MJDP01000001
Bacillota
Enterococcus hirae [MJDP]
414400
414310
-
Ser
GGA
[ENA]
¡û
>W1711459531
MJDQ01000007
Bacillota
Enterococcus hirae [MJDQ]
180008
179918
-
Ser
GGA
[ENA]
¡û
>W1711459580
MJDR01000001
Bacillota
Enterococcus hirae [MJDR]
504511
504421
-
Ser
GGA
[ENA]
¡û
>W1711459641
MJDS01000001
Bacillota
Enterococcus hirae [MJDS]
505415
505325
-
Ser
GGA
[ENA]
¡û
>W1711459737
MJDT01000184
Bacillota
Enterococcus hirae [MJDT]
1908
1818
-
Ser
GGA
[ENA]
¡û
>W1711459764
MJDU01000008
Bacillota
Enterococcus hirae [MJDU]
172464
172374
-
Ser
GGA
[ENA]
¡û
>W1711459830
MJDV01000007
Bacillota
Enterococcus hirae [MJDV]
179976
179886
-
Ser
GGA
[ENA]
¡û
>W1711459877
MJDW01000001
Bacillota
Enterococcus hirae [MJDW]
407971
407881
-
Ser
GGA
[ENA]
¡û
>WENV181805451
OGSI01002754
[OGSI] human gut metagenome; fecal sample 4 from infant 8
1325
1415
+
Ser
GGA
[ENA]
¢þ
>W141383584
JDFT01000023
Bacillota
Enterococcus mundtii CRL35 [JDFT]
36947
36857
-
Ser
GGA
[ENA]
¡û
>WENV170550283
CXVT01001938
[CXVT] Human gut metagenome genome assembly, contig: mG12_contig003027.; ENVO:feces
2130
2040
-
Ser
GGA
[ENA]
¢þ
>C181074970
CP023011
Bacillota
Enterococcus hirae FDAARGOS_234 [CP023011]
2538351
2538261
-
Ser
GGA
-
¡û
>C191035382
CP025473
Bacillota
Enterococcus mundtii Pe161 [CP025473]
974579
974669
+
Ser
GGA
-
¡û
>C191204855
LR134297
Bacillota
Enterococcus hirae NCTC12368 [LR134297]
1930667
1930577
-
Ser
GGA
-
¡û
>W141699612
JMIG01000012
Bacillota
Enterococcus hirae [JMIG]
83
173
+
Ser
GGA
[ENA]
¡û
>W1910609977
LESA01000010
Bacillota
Enterococcus hirae 104EA1 [LESA]
223605
223695
+
Ser
GGA
[ENA]
¡û
>W1910610007
LESB01000004
Bacillota
Enterococcus hirae 10AEA1 [LESB]
236425
236335
-
Ser
GGA
[ENA]
¡û
>W1910610053
LESC01000002
Bacillota
Enterococcus hirae 126EA1 [LESC]
267199
267289
+
Ser
GGA
[ENA]
¡û
>W1910610119
LESD01000007
Bacillota
Enterococcus hirae 175EA1 [LESD]
236271
236181
-
Ser
GGA
[ENA]
¡û
>W1910610203
LESE01000015
Bacillota
Enterococcus hirae 186EA1 [LESE]
1270
1360
+
Ser
GGA
[ENA]
¡û
>W1910610243
LESF01000002
Bacillota
Enterococcus hirae 260AEA1 [LESF]
509615
509525
-
Ser
GGA
[ENA]
¡û
>W1910610344
LESH01000001
Bacillota
Enterococcus hirae 321EA1 [LESH]
3315
3405
+
Ser
GGA
[ENA]
¡û
>W1910610410
LESI01000003
Bacillota
Enterococcus hirae 41EA1 [LESI]
277356
277266
-
Ser
GGA
[ENA]
¡û
>W1910610463
LESJ01000002
Bacillota
Enterococcus hirae 88EA1 [LESJ]
263547
263637
+
Ser
GGA
[ENA]
¡û
>W1911085739
NNSV01000012
Bacillota
Enterococcus hirae AAK_VMS5 [NNSV]
733892
733802
-
Ser
GGA
[ENA]
¡û
>W1911238939
NSDC01000044
Bacillota
Enterococcus hirae 1013 [NSDC]
180136
180046
-
Ser
GGA
[ENA]
¡û
>W1911239007
NSDD01000092
Bacillota
Enterococcus hirae 1725 [NSDD]
172656
172566
-
Ser
GGA
[ENA]
¡û
>W1810273876
PSQK01000006
Bacillota
Enterococcus hirae UPM01 [PSQK]
179257
179167
-
Ser
GGA
[ENA]
¡û
>W1810273936
PSQL01000006
Bacillota
Enterococcus hirae UPM02 [PSQL]
179257
179167
-
Ser
GGA
[ENA]
¡û
>W1810586787
QFFP01000005
Bacillota
Enterococcus hirae HPCN4 [QFFP]
198109
198019
-
Ser
GGA
[ENA]
¡û
>W1510079584
CDRF01000988
Bacillota
Enterococcus hirae 1b3B [CDRF]
2137
2047
-
Ser
GGA
[ENA]
¡û
>W1510080077
CDRM01000973
Bacillota
Enterococcus hirae 1g9A [CDRM]
343
433
+
Ser
GGA
[ENA]
¡û
>W1510080118
CDRM01001271
Bacillota
Enterococcus hirae 1g9A [CDRM]
623
533
-
Ser
GGA
[ENA]
¡û
>W1511694072
LGAO01000044
Bacillota
Enterococcus hirae 19m [LGAO]
311919
311829
-
Ser
GGA
[ENA]
¡û
>C121013958
CP003504
Bacillota
Enterococcus hirae ATCC 9790 [CP003504]
2731880
2731790
-
Ser
GGA
-
¡û
>C161089183
CP015516
Bacillota
Enterococcus hirae R17 [CP015516]
930616
930706
+
Ser
GGA
[Ensembl]
¡û
>W1710659454
JXKR01000004
Bacillota
Enterococcus hirae [JXKR]
163512
163602
+
Ser
GGA
[ENA]
¡û
>W1710743215
LGUK01000064
Bacillota
Enterococcus hirae 88-15-E09 [LGUK]
38
128
+
Ser
GGA
[ENA]
¡û
>W1710743384
LGUN01000077
Bacillota
Enterococcus hirae 57-03-H11 [LGUN]
1017
927
-
Ser
GGA
[ENA]
¡û
>W1710762428
LIJA01000066
Bacillota
Enterococcus hirae 81-15-F4 [LIJA]
180
270
+
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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