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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.13709 (12 seq.)
>W131218297
ATXO01000006
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
128514
128422
-
Ser
CGA
[ENA]
¡û
>WENV180014141
FPIC01067204
[FPIC] soil metagenome; Soil
1428
1336
-
Ser
CGA
[ENA]
¢þ
>WENV181226141
OFDK01000090
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
38757
38665
-
Ser
CGA
[ENA]
¢þ
>WENV181408425
OGCH01003006
[OGCH] hot springs metagenome; hot springs
4831
4923
+
Ser
CGA
[ENA]
¢þ
>C10103651
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
2140996
2141088
+
Ser
CGA
[Ensembl]
¡û
>C11105414
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
413675
413583
-
Ser
CGA
[Ensembl]
¡û
>C11105459
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
554427
554335
-
Ser
CGA
[Ensembl]
¡û
>C11105474
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
2087471
2087563
+
Ser
CGA
[Ensembl]
¡û
>C11105857
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1991502
1991594
+
Ser
CGA
[Ensembl]
¡û
>W11139375
AEKB01000003
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
110597
110689
+
Ser
CGA
[ENA]
¡û
>W11139431
AEKC01000023
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
12297
12389
+
Ser
CGA
[ENA]
¡û
>W11139487
AEKD01000048
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
8060
7968
-
Ser
CGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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