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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.138067 (8 seq.)
>A171006424
CP013011
Thermoproteota
Pyrodictium delaneyi Su06 [CP013011]
614652
614729
+
Val
GAC
-
¡û
>A178000150
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
1316223
1316128
-
Val
GAC
-
¡û
>A177000013
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
1316223
1316129
-
Val
GAC
-
¡û
>WENV181285430
OFGS01000350
[OFGS] hot springs metagenome; Water and soil
5954
6029
+
Val
GAC
[ENA]
¢þ
>At0097
CP000493
Thermoproteota
Hyperthermus butylicus DSM 5456 [CP000493]
65064
65141
+
Val
GAC
[Ensembl]
¡û
>At0398
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
1066315
1066408
+
Val
GAC
[Ensembl]
¡û
>W1910870018
NCQP01000007
Thermoproteota
Pyrodictium delaneyi Hulk [NCQP]
276888
276965
+
Val
GAC
[ENA]
¡û
>W1610772499
LNTB01000001
Thermoproteota
Pyrodictium occultum PL-19 [LNTB]
564031
564108
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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