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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144612 (7 seq.)
>W1711582512
MNVR01000017
Unclassified
Candidatus Omnitrophica bacterium CG1_02_44_16 [MNVR]
28384
28310
-
Glu
TTC
[ENA]
¡û
>WENV180371404
OBOI01002204
[OBOI] sediment metagenome; sediment
3861
3936
+
Glu
TTC
[ENA]
¡û
>WENV183665349
ORJL010460709
[ORJL] groundwater metagenome; groundwater
4880
4954
+
Glu
TTC
[ENA]
¡û
>WENV183674620
ORJL011411158
[ORJL] groundwater metagenome; groundwater
3001
2924
-
Glu
TTC
[ENA]
¡û
>WENV170007603
AMWB02143997
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
4486
4562
+
Glu
TTC
[ENA]
¡û
>WENV170672092
LAHU01305322
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
45
122
+
Glu
TTC
[ENA]
¡û
>C191016074
CP019384
Unclassified
Candidatus Velamenicoccus archaeovorus LiM [CP019384]
1800007
1800082
+
Glu
TTC
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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