This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.144910 (74 seq.)
>W1710994867
LPZL01000110
Actinomycetota
Rhodococcus corynebacterioides [LPZL]
4696
4620
-
Ile
GAT
[ENA]
¡û
>W1711351274
MDCH01000006
Actinomycetota
Rhodococcus erythropolis [MDCH]
343114
343040
-
Ile
GAT
[ENA]
¡û
>W1711705179
MSQF01000006
Actinomycetota
Rhodococcus sp. YL-0 [MSQF]
30458
30384
-
Ile
GAT
[ENA]
¡û
>W1711749104
MUMG01000073
Actinomycetota
Crossiella equi [MUMG]
14461
14535
+
Ile
GAT
[ENA]
¡û
>W1711766519
MUYM01000046
Actinomycetota
Lentzea kentuckyensis [MUYM]
39297
39223
-
Ile
GAT
[ENA]
¡û
>C171051018
CP016793
Actinomycetota
Lentzea guizhouensis DHS C013 [CP016793]
2889038
2888964
-
Ile
GAT
-
¡û
>C171095461
CP019572
Actinomycetota
Rhodococcus sp. MTM3W5.2 [CP019572]
5646278
5646204
-
Ile
GAT
-
¡û
>W131170921
ARFV01000072
Actinomycetota
Actinokineospora enzanensis DSM 44649 [ARFV]
5143
5069
-
Ile
GAT
[ENA]
¡û
>WENV180209581
OBAL01005451
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1441
1367
-
Ile
GAT
[ENA]
¢þ
>WENV180356727
OBNL01013450
[OBNL] marine metagenome; ENVO:00002010
324
250
-
Ile
GAT
[ENA]
¢þ
>WENV180391881
OBPN01084693
[OBPN] marine metagenome; seawater
198
272
+
Ile
GAT
[ENA]
¢þ
>WENV180393707
OBPR01002008
[OBPR] marine metagenome; ENVO:00002042
444
370
-
Ile
GAT
[ENA]
¢þ
>WENV180399132
OBQG01000921
[OBQG] marine metagenome; ENV:00002010
627
553
-
Ile
GAT
[ENA]
¢þ
>WENV180399263
OBQH01000029
[OBQH] marine metagenome; ENV:00002010
2640
2714
+
Ile
GAT
[ENA]
¢þ
>W141091837
AUZK01000005
Actinomycetota
Rhodococcus erythropolis DN1 [AUZK]
94458
94532
+
Ile
GAT
[ENA]
¡û
>WENV181324419
OFLE01007309
[OFLE] marine metagenome; sea ice
90
164
+
Ile
GAT
[ENA]
¢þ
>W141170063
AXWW01000013
Actinomycetota
Actinokineospora inagensis DSM 44258 [AXWW]
120640
120714
+
Ile
GAT
[ENA]
¡û
>W141238686
BBLL01000259
Actinomycetota
Rhodococcus erythropolis [BBLL]
86096
86022
-
Ile
GAT
[ENA]
¡û
>WENV183619714
OOFQ01037156
[OOFQ] marine metagenome; seawater
253
327
+
Ile
GAT
[ENA]
¢þ
>ENV08001181
ABMR01024922
saltern metagenome; microbial fraction from medium salinity saltern in San Diego, CA
96
22
-
Ile
GAT
[ENA]
¡û
>WENV170645651
JNSL01000179
[JNSL] freshwater metagenome; water column of the freshwater reservoir Embalse de Amadorio in Spain
14
90
+
Ile
GAT
[ENA]
¢þ
>C181081496
CP023445
Actinomycetota
Actinosynnema pretiosum X47 [CP023445]
12191
12266
+
Ile
GAT
-
¡û
>C191064769
CP029607
Actinomycetota
Actinosynnema pretiosum subsp. pretiosum ATCC 31280 [CP029607]
12196
12271
+
Ile
GAT
-
¡û
>W09108117
ABTA01000005
Actinomycetota
Actinosynnema mirum DSM 43827 [ABTA]
208216
208140
-
Ile
GAT
[ENA]
¡û
>W141757621
JNYA01000865
Actinomycetota
Actinosynnema pretiosum subsp. auranticum [JNYA]
493
569
+
Ile
GAT
[ENA]
¡û
>W141758371
JNYO01000004
Actinomycetota
Saccharothrix syringae [JNYO]
96291
96215
-
Ile
GAT
[ENA]
¡û
>W141766532
JOEA01000020
Actinomycetota
Lentzea albidocapillata [JOEA]
205199
205273
+
Ile
GAT
[ENA]
¡û
>W141768595
JOFI01000003
Actinomycetota
Lentzea aerocolonigenes [JOFI]
181262
181188
-
Ile
GAT
[ENA]
¡û
>W141771453
JOHE01000146
Actinomycetota
Lentzea aerocolonigenes [JOHE]
674
600
-
Ile
GAT
[ENA]
¡û
>W141773495
JOIM01000012
Actinomycetota
Rhodococcus opacus [JOIM]
100654
100580
-
Ile
GAT
[ENA]
¡û
>C09100610
CP001630
Actinomycetota
Actinosynnema mirum DSM 43827 [CP001630]
12199
12275
+
Ile
GAT
[Ensembl]
¡û
>W1911239656
NSDY01000001
Actinomycetota
Rhodococcus sp. ACPA4 [NSDY]
4532306
4532380
+
Ile
GAT
[ENA]
¡û
>SRA1001239
SRR001057.3917
Solar Salterns, microbial fraction from medium salinity saltern in San Diego, CA (SRP000147)
96
22
-
Ile
GAT
[SRA]
>W1810295962
PTIX01000006
Actinomycetota
Actinokineospora auranticolor YU 961-1 [PTIX]
354523
354597
+
Ile
GAT
[ENA]
¡û
>W1810582404
QEUH01000005
Actinomycetota
Rhodococcus sp. AQ5-07 [QEUH]
97659
97733
+
Ile
GAT
[ENA]
¡û
>W1810592234
QFWW01000037
Actinomycetota
Lentzea terrae NEAU-LZS 42 [QFWW]
191912
191838
-
Ile
GAT
[ENA]
¡û
>W1810597131
QGHB01000001
Actinomycetota
Lentzea atacamensis DSM 45480 [QGHB]
679660
679734
+
Ile
GAT
[ENA]
¡û
>W1810697001
QLTT01000002
Actinomycetota
Lentzea atacamensis DSM 45479 [QLTT]
137832
137758
-
Ile
GAT
[ENA]
¡û
>W1810763071
QQAU01000018
Actinomycetota
Lentzea flaviverrucosa DSM 44664 [QQAU]
154190
154116
-
Ile
GAT
[ENA]
¡û
>C151072345
CP010797
Actinomycetota
Rhodococcus sp. B7740 [CP010797]
3794412
3794486
+
Ile
GAT
[Ensembl]
¡û
>W1510013108
BBOJ01000001
Actinomycetota
Lentzea aerocolonigenes NBRC 13195 [BBOJ]
404106
404180
+
Ile
GAT
[ENA]
¡û
>C11101239
CP002786
Actinomycetota
Hoyosella subflava DQS3-9A1 [CP002786]
10764
10838
+
Ile
GAT
[Ensembl]
¡û
>W1511529154
JYJG01000129
Actinomycetota
Lentzea aerocolonigenes NRRL B-16140 [JYJG]
15209
15283
+
Ile
GAT
[ENA]
¡û
>W1511535400
JYOP01000001
Actinomycetota
Rhodococcus sp. AD45 [JYOP]
1916723
1916797
+
Ile
GAT
[ENA]
¡û
>W1511697437
LGDY01000014
Actinomycetota
Nocardia sp. NRRL S-836 [LGDY]
77790
77864
+
Ile
GAT
[ENA]
¡û
>W11177955
AGCF01000001
Actinomycetota
Rhodococcus erythropolis XP [AGCF]
2316650
2316724
+
Ile
GAT
[ENA]
¡û
>C161005740
CP007255
Actinomycetota
Rhodococcus erythropolis R138 [CP007255]
667084
667010
-
Ile
GAT
[Ensembl]
¡û
>C161045372
CP012749
Actinomycetota
Rhodococcus sp. 008 [CP012749]
2226064
2226138
+
Ile
GAT
[Ensembl]
¡û
>C161100021
CP016594
Actinomycetota
Gordonia terrae 3612 [CP016594]
11294
11368
+
Ile
GAT
-
¡û
>W1610068630
BCRM01000008
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
190194
190120
-
Ile
GAT
[ENA]
¡û
>W1610069112
BCRV01000012
Actinomycetota
Skermania piniformis NBRC 15059 [BCRV]
138296
138220
-
Ile
GAT
[ENA]
¡û
>W1610079735
BDBW01000007
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
23941
23867
-
Ile
GAT
[ENA]
¡û
>C131019788
HE804045
Actinomycetota
Saccharothrix espanaensis DSM 44229 type strain: DSM 44229 [HE804045]
12093
12169
+
Ile
GAT
[Ensembl]
¡û
>W1610617945
LGYZ01000090
Actinomycetota
Nocardia arizonensis [LGYZ]
15011
14935
-
Ile
GAT
[ENA]
¡û
>W1610849524
LPZL01000110
Actinomycetota
Rhodococcus corynebacterioides [LPZL]
4696
4620
-
Ile
GAT
[ENA]
¡û
>W1610891001
LRRB01000206
Actinomycetota
Aldersonia kunmingensis [LRRB]
54640
54714
+
Ile
GAT
[ENA]
¡û
>W1610905880
LSBM01000294
Actinomycetota
Rhodococcus sp. SC4 [LSBM]
105760
105834
+
Ile
GAT
[ENA]
¡û
>W1611041233
LZMP01000019
Actinomycetota
Gordonia sp. UCD-TK1 [LZMP]
21135
21061
-
Ile
GAT
[ENA]
¡û
>W1710066003
BCRM01000008
Actinomycetota
Rhodococcus erythropolis NBRC 15567 [BCRM]
190194
190120
-
Ile
GAT
[ENA]
¡û
>W1710066485
BCRV01000012
Actinomycetota
Skermania piniformis NBRC 15059 [BCRV]
138296
138220
-
Ile
GAT
[ENA]
¡û
>W1710071855
BCWX01000005
Actinomycetota
Rhodococcus globerulus NBRC 14531 [BCWX]
364656
364582
-
Ile
GAT
[ENA]
¡û
>W1710072047
BCXB01000021
Actinomycetota
Rhodococcus marinonascens NBRC 14363 [BCXB]
40158
40084
-
Ile
GAT
[ENA]
¡û
>W1710076507
BDAM01000007
Actinomycetota
Rhodococcus coprophilus NBRC 100603 [BDAM]
239297
239371
+
Ile
GAT
[ENA]
¡û
>W1710078294
BDBW01000007
Actinomycetota
Nocardia puris NBRC 108233 [BDBW]
23941
23867
-
Ile
GAT
[ENA]
¡û
>W1710515819
FNCC01000029
Actinomycetota
Lentzea fradiae [FNCC]
12011
12085
+
Ile
GAT
[ENA]
¡û
>W1710519458
FNET01000006
Actinomycetota
Lentzea albidocapillata violacea [FNET]
194900
194974
+
Ile
GAT
[ENA]
¡û
>W1710524688
FNIX01000014
Actinomycetota
Lentzea jiangxiensis [FNIX]
137001
136927
-
Ile
GAT
[ENA]
¡û
>W1710550907
FOFR01000001
Actinomycetota
Lentzea xinjiangensis [FOFR]
163941
163867
-
Ile
GAT
[ENA]
¡û
>W1710551065
FOFT01000018
Actinomycetota
Lentzea flaviverrucosa [FOFT]
81532
81606
+
Ile
GAT
[ENA]
¡û
>W1710551160
FOFV01000036
Actinomycetota
Lentzea albida [FOFV]
15754
15828
+
Ile
GAT
[ENA]
¡û
>W1710551778
FOGI01000019
Actinomycetota
Actinokineospora terrae [FOGI]
685
611
-
Ile
GAT
[ENA]
¡û
>W1710574727
FOYL01000004
Actinomycetota
Lentzea waywayandensis [FOYL]
512591
512517
-
Ile
GAT
[ENA]
¡û
>W1710606873
FWYC01000032
Actinomycetota
Lentzea albidocapillata [FWYC]
5167
5093
-
Ile
GAT
[ENA]
¡û
>W1710744120
LGYZ01000090
Actinomycetota
Nocardia arizonensis [LGYZ]
15011
14935
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK