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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145013 (90 seq.)
>W131001385
AGYD01000005
Campylobacterota
Campylobacter ureolyticus ACS-301-V-Sch3b [AGYD]
56493
56417
-
Arg
TCG
[ENA]
¡û
>W131171350
ARGD01000029
Campylobacterota
Campylobacter ureolyticus DSM 20703 [ARGD]
50397
50473
+
Arg
TCG
[ENA]
¡û
>WENV180118637
OASD01000204
[OASD] human gut metagenome; ENVO:feces
15701
15777
+
Arg
TCG
[ENA]
¢þ
>WENV180403400
OBRT01000095
[OBRT] human gut metagenome; ENVO:feces
17457
17381
-
Arg
TCG
[ENA]
¢þ
>WENV180405399
OBTM01003989
[OBTM] human gut metagenome; ENVO:feces
1602
1678
+
Arg
TCG
[ENA]
¢þ
>WENV180444456
OBWZ01012725
[OBWZ] human gut metagenome; faeces
111
187
+
Arg
TCG
[ENA]
¢þ
>WENV180544855
OCIR01053524
[OCIR] human gut metagenome; human gut
191
115
-
Arg
TCG
[ENA]
¢þ
>WENV180597208
OCPK01009684
[OCPK] human gut metagenome; ENVO:feces
223
147
-
Arg
TCG
[ENA]
¢þ
>WENV180698046
ODDE01023906
[ODDE] human metagenome; G_DNA_Supragingival plaque
352
428
+
Arg
TCG
[ENA]
¢þ
>WENV180728438
ODGU01049098
[ODGU] human metagenome; G_DNA_Supragingival plaque
1009
933
-
Arg
TCG
[ENA]
¢þ
>WENV180732300
ODGY01000113
[ODGY] human metagenome; G_DNA_Supragingival plaque
7223
7299
+
Arg
TCG
[ENA]
¢þ
>WENV180733879
ODGZ01001215
[ODGZ] human metagenome; G_DNA_Supragingival plaque
13062
13138
+
Arg
TCG
[ENA]
¢þ
>WENV180751388
ODHS01047989
[ODHS] human metagenome; G_DNA_Supragingival plaque
507
431
-
Arg
TCG
[ENA]
¢þ
>WENV180764767
ODIB01000936
[ODIB] human metagenome; G_DNA_Supragingival plaque
1388
1464
+
Arg
TCG
[ENA]
¢þ
>WENV180786247
ODIR01133536
[ODIR] human metagenome; G_DNA_Stool
224
148
-
Arg
TCG
[ENA]
¢þ
>WENV180788256
ODIS01041897
[ODIS] human metagenome; G_DNA_Supragingival plaque
282
358
+
Arg
TCG
[ENA]
¢þ
>WENV180797721
ODJB01109026
[ODJB] human metagenome; G_DNA_Supragingival plaque
228
304
+
Arg
TCG
[ENA]
¢þ
>WENV180809739
ODJK01041686
[ODJK] human metagenome; G_DNA_Subgingival plaque
553
477
-
Arg
TCG
[ENA]
¢þ
>WENV180813822
ODJO01002957
[ODJO] human metagenome; G_DNA_Supragingival plaque
3883
3807
-
Arg
TCG
[ENA]
¢þ
>WENV180835669
ODKE01007680
[ODKE] human metagenome; G_DNA_Supragingival plaque
2684
2608
-
Arg
TCG
[ENA]
¢þ
>WENV180843159
ODKN01000732
[ODKN] human metagenome; G_DNA_Supragingival plaque
13565
13641
+
Arg
TCG
[ENA]
¢þ
>WENV180846354
ODKT01009483
[ODKT] human metagenome; G_DNA_Supragingival plaque
708
632
-
Arg
TCG
[ENA]
¢þ
>WENV180860278
ODLD01040744
[ODLD] human metagenome; G_DNA_Supragingival plaque
504
428
-
Arg
TCG
[ENA]
¢þ
>WENV180881669
ODMA01030502
[ODMA] human metagenome; G_DNA_Supragingival plaque
55
131
+
Arg
TCG
[ENA]
¢þ
>WENV180882754
ODMC01000465
[ODMC] human metagenome; G_DNA_Tongue dorsum
1933
1857
-
Arg
TCG
[ENA]
¢þ
>WENV180889020
ODMN01009928
[ODMN] human metagenome; G_DNA_Supragingival plaque
2014
1938
-
Arg
TCG
[ENA]
¢þ
>WENV180922143
ODTJ01001518
[ODTJ] human metagenome; G_DNA_Supragingival plaque
13056
13132
+
Arg
TCG
[ENA]
¢þ
>WENV180924992
ODTK01029615
[ODTK] human metagenome; G_DNA_Supragingival plaque
867
791
-
Arg
TCG
[ENA]
¢þ
>WENV180930810
ODTP01000416
[ODTP] human metagenome; G_DNA_Tongue dorsum
31455
31531
+
Arg
TCG
[ENA]
¢þ
>WENV180945278
ODUC01102622
[ODUC] human metagenome; G_DNA_Supragingival plaque
160
236
+
Arg
TCG
[ENA]
¢þ
>WENV180948143
ODUG01000327
[ODUG] human metagenome; G_DNA_Tongue dorsum
8076
8152
+
Arg
TCG
[ENA]
¢þ
>WENV180952191
ODUH01159804
[ODUH] human metagenome; G_DNA_Subgingival plaque
150
226
+
Arg
TCG
[ENA]
¢þ
>WENV180964879
ODUO01039240
[ODUO] human metagenome; G_DNA_Supragingival plaque
395
319
-
Arg
TCG
[ENA]
¢þ
>WENV180976037
ODUY01039486
[ODUY] human metagenome; G_DNA_Supragingival plaque
486
562
+
Arg
TCG
[ENA]
¢þ
>WENV180981121
ODVE01007430
[ODVE] human metagenome; G_DNA_Supragingival plaque
2538
2614
+
Arg
TCG
[ENA]
¢þ
>WENV180983724
ODVF01031327
[ODVF] human metagenome; G_DNA_Supragingival plaque
527
451
-
Arg
TCG
[ENA]
¢þ
>WENV180985546
ODVJ01007692
[ODVJ] human metagenome; G_DNA_Tongue dorsum
3260
3336
+
Arg
TCG
[ENA]
¢þ
>WENV180987416
ODVK01022346
[ODVK] human metagenome; G_DNA_Supragingival plaque
183
259
+
Arg
TCG
[ENA]
¢þ
>WENV180998474
ODVT01000477
[ODVT] human metagenome; G_DNA_Buccal mucosa
14465
14541
+
Arg
TCG
[ENA]
¢þ
>WENV181004167
ODVX01123036
[ODVX] human metagenome; G_DNA_Supragingival plaque
127
203
+
Arg
TCG
[ENA]
¢þ
>WENV181019670
ODWU01009241
[ODWU] human metagenome; G_DNA_Supragingival plaque
1994
1918
-
Arg
TCG
[ENA]
¢þ
>WENV181030240
ODXF01097117
[ODXF] human metagenome; G_DNA_Supragingival plaque
163
239
+
Arg
TCG
[ENA]
¢þ
>WENV181040621
ODXS01000334
[ODXS] human metagenome; G_DNA_Tongue dorsum
28152
28228
+
Arg
TCG
[ENA]
¢þ
>WENV181050876
ODYD01079488
[ODYD] human metagenome; G_DNA_Supragingival plaque
167
243
+
Arg
TCG
[ENA]
¢þ
>WENV181057291
ODYL01000019
[ODYL] human metagenome; G_DNA_Tongue dorsum
103365
103441
+
Arg
TCG
[ENA]
¢þ
>WENV181064624
ODYP01058676
[ODYP] human metagenome; G_DNA_Supragingival plaque
66
142
+
Arg
TCG
[ENA]
¢þ
>WENV181066840
ODZI01002369
[ODZI] human metagenome; G_DNA_Supragingival plaque
5144
5068
-
Arg
TCG
[ENA]
¢þ
>WENV181077596
OEAP01084276
[OEAP] human metagenome; G_DNA_Supragingival plaque
393
317
-
Arg
TCG
[ENA]
¢þ
>WENV181079317
OEAS01004578
[OEAS] human metagenome; G_DNA_Supragingival plaque
4370
4294
-
Arg
TCG
[ENA]
¢þ
>WENV181084437
OEAV01233512
[OEAV] human metagenome; G_DNA_Supragingival plaque
82
158
+
Arg
TCG
[ENA]
¢þ
>WENV181090564
OEBC01001259
[OEBC] human metagenome; G_DNA_Supragingival plaque
7012
6936
-
Arg
TCG
[ENA]
¢þ
>WENV181094186
OEBY01000011
[OEBY] human metagenome; G_DNA_Tongue dorsum
96882
96806
-
Arg
TCG
[ENA]
¢þ
>WENV181098112
OECA01085480
[OECA] human metagenome; G_DNA_Tongue dorsum
79
3
-
Arg
TCG
[ENA]
¢þ
>WENV181136855
OEGI01095468
[OEGI] human metagenome; G_DNA_Supragingival plaque
52
128
+
Arg
TCG
[ENA]
¢þ
>WENV181137817
OEGJ01030889
[OEGJ] human metagenome; G_DNA_Supragingival plaque
500
424
-
Arg
TCG
[ENA]
¢þ
>WENV181143846
OEHM01014772
[OEHM] human metagenome; G_DNA_Supragingival plaque
1189
1113
-
Arg
TCG
[ENA]
¢þ
>WENV181146800
OEHQ01026245
[OEHQ] human metagenome; G_DNA_Supragingival plaque
818
742
-
Arg
TCG
[ENA]
¢þ
>WENV181150874
OEHW01009600
[OEHW] human metagenome; G_DNA_Tongue dorsum
3306
3382
+
Arg
TCG
[ENA]
¢þ
>WENV181153429
OEIA01076742
[OEIA] human metagenome; G_DNA_Supragingival plaque
307
231
-
Arg
TCG
[ENA]
¢þ
>WENV181159087
OEIH01044320
[OEIH] human metagenome; G_DNA_Supragingival plaque
313
389
+
Arg
TCG
[ENA]
¢þ
>WENV181160904
OEIK01058059
[OEIK] human metagenome; G_DNA_Supragingival plaque
310
234
-
Arg
TCG
[ENA]
¢þ
>WENV181177219
OEJS01000157
[OEJS] human metagenome; G_DNA_Supragingival plaque
23863
23787
-
Arg
TCG
[ENA]
¢þ
>WENV181181342
OEJU01022346
[OEJU] human metagenome; G_DNA_Supragingival plaque
405
481
+
Arg
TCG
[ENA]
¢þ
>WENV181774568
OGRE01042795
[OGRE] human gut metagenome; faeces
494
418
-
Arg
TCG
[ENA]
¢þ
>WENV181804462
OGSF01000972
[OGSF] human gut metagenome; fecal sample 3 from infant 5
4712
4788
+
Arg
TCG
[ENA]
¢þ
>WENV181806409
OGSK01004126
[OGSK] human gut metagenome; fecal sample 2 from infant 5
323
399
+
Arg
TCG
[ENA]
¢þ
>WENV181811315
OGSY01000674
[OGSY] human gut metagenome; fecal sample 5 from infant 8
9098
9174
+
Arg
TCG
[ENA]
¢þ
>WENV181821477
OGUE01006035
[OGUE] human gut metagenome; fecal sample 1 from infant 5
711
635
-
Arg
TCG
[ENA]
¢þ
>C08003198
CP000776
Campylobacterota
Campylobacter hominis ATCC BAA-381 [CP000776]
1352768
1352695
-
Arg
TCG
[Ensembl]
¡û
>WENV183511031
OMHV01002086
[OMHV] human oral metagenome; human oral
525
449
-
Arg
TCG
[ENA]
¢þ
>W141451032
JFAP01000002
Campylobacterota
Campylobacter corcagiensis CIT045 [JFAP]
2763
2687
-
Arg
TCG
[ENA]
¡û
>W141463403
JFJK01000004
Campylobacterota
Campylobacter ureolyticus [JFJK]
40762
40686
-
Arg
TCG
[ENA]
¡û
>C181038863
CP019682
Campylobacterota
Campylobacter sputorum aubsp. sputorum RM3237 [CP019682]
1256107
1256031
-
Arg
TCG
-
¡û
>C181038908
CP019683
Campylobacterota
Campylobacter sputorum bv. faecalis CCUG 20703 [CP019683]
1299232
1299156
-
Arg
TCG
-
¡û
>C181038953
CP019684
Campylobacterota
Campylobacter sputorum bv. paraureolyticus LMG 11764 LMG 17589 [CP019684]
1268538
1268462
-
Arg
TCG
-
¡û
>C181038997
CP019685
Campylobacterota
Campylobacter sputorum RM8705 [CP019685]
1219446
1219370
-
Arg
TCG
-
¡û
>W1810056852
PDHH01000003
Campylobacterota
Campylobacter blaseri 17S00004-5 [PDHH]
43052
42976
-
Arg
TCG
[ENA]
¡û
>W1810056889
PDHI01000003
Campylobacterota
Campylobacter blaseri 17S00008-12 [PDHI]
43052
42976
-
Arg
TCG
[ENA]
¡û
>W1810187699
PKHU01000003
Campylobacterota
Campylobacter ureolyticus UMB0112 [PKHU]
256310
256386
+
Arg
TCG
[ENA]
¡û
>C151092511
CP012195
Campylobacterota
Campylobacter ureolyticus RIGS 9880 [CP012195]
1466762
1466838
+
Arg
TCG
-
¡û
>C151092550
CP012196
Campylobacterota
Campylobacter gracilis ATCC 33236 [CP012196]
2139918
2139994
+
Arg
TCG
-
¡û
>W10106108
ACYG01000022
Campylobacterota
Campylobacter gracilis RM3268 [ACYG]
103262
103338
+
Arg
TCG
[ENA]
¡û
>W11108431
ACYG01000022
Campylobacterota
Campylobacter gracilis RM3268 [ACYG]
103262
103338
+
Arg
TCG
[ENA]
¡û
>W1511205860
JMTI01000008
Campylobacterota
Campylobacter sputorum biovar sputorum INTA08/209 [JMTI]
125471
125547
+
Arg
TCG
[ENA]
¡û
>W1610419699
FIZO01000001
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZO]
434638
434562
-
Arg
TCG
[ENA]
¡û
>W1610419736
FIZP01000001
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZP]
193063
193139
+
Arg
TCG
[ENA]
¡û
>W1610419780
FIZQ01000003
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZQ]
195420
195496
+
Arg
TCG
[ENA]
¡û
>W1710419435
FIZO01000001
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZO]
434638
434562
-
Arg
TCG
[ENA]
¡û
>W1710419472
FIZP01000001
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZP]
193063
193139
+
Arg
TCG
[ENA]
¡û
>W1710419516
FIZQ01000003
Campylobacterota
Campylobacter geochelonis subsp. fetus [FIZQ]
195420
195496
+
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK