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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145310 (51 seq.)
>C171089486
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
686895
686969
+
Ala
TGC
-
¡û
>C171089488
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
1052851
1052925
+
Ala
TGC
-
¡û
>C171089495
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
1481550
1481624
+
Ala
TGC
-
¡û
>C171089498
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
2293705
2293779
+
Ala
TGC
-
¡û
>C171089526
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
5761372
5761298
-
Ala
TGC
-
¡û
>C171089533
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
5382258
5382184
-
Ala
TGC
-
¡û
>C171089551
CP019158
Bacteroidota
Sphingobacterium sp. B29 [CP019158]
174890
174816
-
Ala
TGC
-
¡û
>WENV180043688
LQAI01007904
[LQAI] bioreactor metagenome; bioreactor_5 inoculated with Wadden Sea sediment; 1st replicate of a sulfate-reducing system that
538
464
-
Ala
TGC
[ENA]
¢þ
>WENV180298296
OBJA01260121
[OBJA] soil metagenome; sediment, water from around vicinity
149
75
-
Ala
TGC
[ENA]
¢þ
>WENV180722912
ODGM01056726
[ODGM] human metagenome; G_DNA_Palatine Tonsils
240
166
-
Ala
TGC
[ENA]
¢þ
>WENV180759116
ODHY01000678
[ODHY] human metagenome; G_DNA_Buccal mucosa
10657
10583
-
Ala
TGC
[ENA]
¢þ
>W141075052
ASZT01000283
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
3323
3249
-
Ala
TGC
[ENA]
¡û
>WENV180845859
ODKT01002579
[ODKT] human metagenome; G_DNA_Supragingival plaque
9593
9519
-
Ala
TGC
[ENA]
¢þ
>WENV180857000
ODLA01000407
[ODLA] human metagenome; G_DNA_Buccal mucosa
7865
7791
-
Ala
TGC
[ENA]
¢þ
>WENV180860031
ODLD01013112
[ODLD] human metagenome; G_DNA_Supragingival plaque
12
86
+
Ala
TGC
[ENA]
¢þ
>WENV180937211
ODTV01028210
[ODTV] human metagenome; G_DNA_Buccal mucosa
268
194
-
Ala
TGC
[ENA]
¢þ
>WENV180979525
ODVC01000260
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
258
332
+
Ala
TGC
[ENA]
¢þ
>WENV180991787
ODVO01002039
[ODVO] human metagenome; G_DNA_Buccal mucosa
4087
4013
-
Ala
TGC
[ENA]
¢þ
>WENV180992336
ODVP01001119
[ODVP] human metagenome; G_DNA_Buccal mucosa
4083
4009
-
Ala
TGC
[ENA]
¢þ
>WENV181005868
ODWA01000074
[ODWA] human metagenome; G_DNA_Buccal mucosa
258
332
+
Ala
TGC
[ENA]
¢þ
>WENV181010349
ODWH01001083
[ODWH] human metagenome; G_DNA_Buccal mucosa
2422
2496
+
Ala
TGC
[ENA]
¢þ
>WENV181092957
OEBK01121070
[OEBK] marine metagenome; ENVO:00002010 for 'seawater
113
39
-
Ala
TGC
[ENA]
¢þ
>WENV181119988
OEFJ01001366
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
5699
5625
-
Ala
TGC
[ENA]
¢þ
>WENV181156807
OEIE01119943
[OEIE] human metagenome; G_DNA_Supragingival plaque
80
154
+
Ala
TGC
[ENA]
¢þ
>WENV181170528
OEIV010054903
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
929
855
-
Ala
TGC
[ENA]
¢þ
>WENV181367851
OFQD01002011
[OFQD] freshwater metagenome; Freshwater Lake
1234
1310
+
Ala
TGC
[ENA]
¢þ
>WENV181854756
OGWK01016801
[OGWK] freshwater metagenome; freshwater
377
451
+
Ala
TGC
[ENA]
¢þ
>WENV183743742
PJUJ01034666
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
121
47
-
Ala
TGC
[ENA]
¢þ
>WENV183743756
PJUJ01036702
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
121
47
-
Ala
TGC
[ENA]
¢þ
>WENV183743766
PJUJ01036924
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
3
77
+
Ala
TGC
[ENA]
¢þ
>WENV170675292
LCWZ01032318
[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
100
24
-
Ala
TGC
[ENA]
¢þ
>WENV170688202
LFRM01233787
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
5886
5962
+
Ala
TGC
[ENA]
¢þ
>WENV170689605
LFRM01303293
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
765
689
-
Ala
TGC
[ENA]
¢þ
>WENV170968646
MTKW01012503
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2751
2677
-
Ala
TGC
[ENA]
¢þ
>W1810503685
QBKH01000017
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
3419
3345
-
Ala
TGC
[ENA]
¡û
>C151002368
AP014583
Bacteroidota
Winogradskyella sp. PG-2 [AP014583]
677128
677052
-
Ala
TGC
[Ensembl]
¡û
>C151002373
AP014583
Bacteroidota
Winogradskyella sp. PG-2 [AP014583]
229596
229520
-
Ala
TGC
[Ensembl]
¡û
>C151047334
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
604949
605023
+
Ala
TGC
[Ensembl]
¡û
>C151047341
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
913776
913850
+
Ala
TGC
[Ensembl]
¡û
>C151047344
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1213445
1213519
+
Ala
TGC
[Ensembl]
¡û
>C151047367
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
5326139
5326065
-
Ala
TGC
[Ensembl]
¡û
>C151047369
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
5318761
5318687
-
Ala
TGC
[Ensembl]
¡û
>C151047380
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
4331899
4331825
-
Ala
TGC
[Ensembl]
¡û
>C151047387
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
3245395
3245321
-
Ala
TGC
[Ensembl]
¡û
>C151047416
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
101391
101317
-
Ala
TGC
[Ensembl]
¡û
>W1511336887
JRAR01000061
Bacteroidota
Porphyromonas sp. COT-290 OH860 [JRAR]
60031
59955
-
Ala
TGC
[ENA]
¡û
>W1511343895
JRFC01000033
Bacteroidota
Porphyromonas sp. COT-290 OH3588 [JRFC]
229
305
+
Ala
TGC
[ENA]
¡û
>W1610584555
LCTZ01000002
Bacteroidota
Allomuricauda eckloniae DK169 [LCTZ]
3633601
3633677
+
Ala
TGC
[ENA]
¡û
>W1610584575
LCTZ01000002
Bacteroidota
Allomuricauda eckloniae DK169 [LCTZ]
1412822
1412746
-
Ala
TGC
[ENA]
¡û
>W1710561193
FONY01000066
Bacteroidota
Thermoflexibacter ruber [FONY]
2125
2199
+
Ala
TGC
[ENA]
¡û
>W1710561195
FONY01000077
Bacteroidota
Thermoflexibacter ruber [FONY]
7150
7076
-
Ala
TGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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