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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145314 (42 seq.)
>W1711503546
MKTS01000001
Bacteroidota
Mucilaginibacter sp. 44-25 [MKTS]
539523
539448
-
His
GTG
[ENA]
¡û
>W1711629932
MPPL01000001
Bacteroidota
Mucilaginibacter polytrichastri [MPPL]
1876672
1876746
+
His
GTG
[ENA]
¡û
>W131165381
ARBN01000003
Bacteroidota
Cytophaga aurantiaca DSM 3654 [ARBN]
73402
73326
-
His
GTG
[ENA]
¡û
>W131229765
AUHA01000003
Bacteroidota
Daejeonella oryzae DSM 19973 [AUHA]
164298
164373
+
His
GTG
[ENA]
¡û
>C005838
CP000383
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 [CP000383]
1157965
1158041
+
His
GTG
[Ensembl]
¡û
>WENV180028203
FTJA01003355
[FTJA] metagenome; soil
12689
12763
+
His
GTG
[ENA]
¢þ
>WENV180304614
OBJI01179811
[OBJI] soil metagenome; soil
157
231
+
His
GTG
[ENA]
¢þ
>w002448
AABD03000005
Bacteroidota
Cytophaga hutchinsonii [AABD]
195272
195194
-
His
GTG
[ENA]
¡û
>W141075067
ASZT01000534
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
46751
46827
+
His
GTG
[ENA]
¡û
>W141075078
ASZT01000586
Bacteroidota
Sphingobacterium sp. IITKGP-BTPF85 [ASZT]
22227
22302
+
His
GTG
[ENA]
¡û
>WENV182541044
OJAQ01004098
[OJAQ] seawater metagenome; Sea water
1459
1385
-
His
GTG
[ENA]
¢þ
>WENV182543186
OJBA01002738
[OJBA] seawater metagenome; Sea water
1244
1170
-
His
GTG
[ENA]
¢þ
>WENV183058486
OLHR01000262
[OLHR] seawater metagenome; Sea water
7233
7307
+
His
GTG
[ENA]
¢þ
>WENV183092172
OLKV01000147
[OLKV] soil metagenome; soil
62527
62453
-
His
GTG
[ENA]
¢þ
>WENV183092197
OLKV01000273
[OLKV] soil metagenome; soil
13193
13267
+
His
GTG
[ENA]
¢þ
>WENV170304163
CESI01023894
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
11530
11455
-
His
GTG
[ENA]
¢þ
>WENV170305363
CESI01139103
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
405
330
-
His
GTG
[ENA]
¢þ
>WENV170822285
MDSY01037538
[MDSY] marine metagenome; seawater
663
588
-
His
GTG
[ENA]
¢þ
>WENV170823956
MDSY01067408
[MDSY] marine metagenome; seawater
11396
11321
-
His
GTG
[ENA]
¢þ
>C181001386
AP017313
Bacteroidota
Mucilaginibacter gotjawali SA3-7 [AP017313]
1966705
1966779
+
His
GTG
-
¡û
>C181072005
CP022743
Bacteroidota
Mucilaginibacter xinganensis BJC16-A31 [CP022743]
3362425
3362350
-
His
GTG
-
¡û
>W1910237080
FPJX01000005
Bacteroidota
Cytophaga hutchinsonii ATCC 33406 DSM 1761 [FPJX]
178325
178249
-
His
GTG
[ENA]
¡û
>W1910378050
FUKX01000021
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
19326
19400
+
His
GTG
[ENA]
¡û
>W1910378081
FUKX01000040
Bacteroidota
Sphingobacterium faecium PCAi_F2.5 [FUKX]
168440
168366
-
His
GTG
[ENA]
¡û
>W1911747173
QWDC01000001
Bacteroidota
Mucilaginibacter conchicola MYSH2 [QWDC]
525230
525304
+
His
GTG
[ENA]
¡û
>W1810503619
QBKH01000001
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
137511
137585
+
His
GTG
[ENA]
¡û
>W1810503669
QBKH01000005
Bacteroidota
Sphingobacterium faecium DSM 11690 [QBKH]
344270
344196
-
His
GTG
[ENA]
¡û
>W1810543357
QDKG01000001
Bacteroidota
Sphingobacterium corticibacter 2c-3 [QDKG]
893946
893872
-
His
GTG
[ENA]
¡û
>W1810676197
QKLV01000006
Bacteroidota
Mucilaginibacter sp. OV119 [QKLV]
361997
361923
-
His
GTG
[ENA]
¡û
>W1810917771
QWDE01000001
Bacteroidota
Mucilaginibacter terrenus ZH6 [QWDE]
1044478
1044552
+
His
GTG
[ENA]
¡û
>C151047349
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
1359833
1359909
+
His
GTG
[Ensembl]
¡û
>C151047353
CP009278
Bacteroidota
Sphingobacterium sp. ML3W [CP009278]
2193768
2193843
+
His
GTG
[Ensembl]
¡û
>W11138403
AEIH01000119
Bacteroidota
Mucilaginibacter paludis DSM 18603 [AEIH]
74153
74079
-
His
GTG
[ENA]
¡û
>C161077169
CP014773
Bacteroidota
Mucilaginibacter sp. PAMC 26640 [CP014773]
4078698
4078624
-
His
GTG
[Ensembl]
¡û
>W1610612069
LGEK01000010
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
52861
52786
-
His
GTG
[ENA]
¡û
>W1710513669
FNAI01000008
Bacteroidota
Mucilaginibacter pineti [FNAI]
330335
330260
-
His
GTG
[ENA]
¡û
>W1710525858
FNJV01000002
Bacteroidota
Mucilaginibacter sp. OK268 [FNJV]
634430
634354
-
His
GTG
[ENA]
¡û
>W1710548318
FODR01000005
Bacteroidota
Mucilaginibacter sp. OK283 [FODR]
485979
486055
+
His
GTG
[ENA]
¡û
>W1710577045
FPAM01000013
Bacteroidota
Mucilaginibacter polytrichastri [FPAM]
99126
99200
+
His
GTG
[ENA]
¡û
>W1710592463
FRCM01000004
Bacteroidota
Mucilaginibacter sp. OK098 [FRCM]
232953
232876
-
His
GTG
[ENA]
¡û
>W1710595934
FTMG01000003
Bacteroidota
Mucilaginibacter lappiensis [FTMG]
532172
532096
-
His
GTG
[ENA]
¡û
>W1710733575
LGEK01000010
Bacteroidota
Mucilaginibacter sp. L294 [LGEK]
52861
52786
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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