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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145320 (4 seq.)
>WENV170018838
BBPD01001373
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
841
764
-
Glu
CTC
[ENA]
¡û
>WENV170020596
BBPE01013599
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1414
1337
-
Glu
CTC
[ENA]
¡û
>WENV170021119
BBPF01002838
[BBPF] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1744
1821
+
Glu
CTC
[ENA]
¡û
>WENV170021766
BBPG01001837
[BBPG] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
1744
1819
+
Glu
CTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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