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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145391 (116 seq.)
>W1710793241
LJPB01000082
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii [LJPB]
65005
64929
-
Asp
GTC
[ENA]
¡û
>W1710793267
LJPB01000175
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii [LJPB]
10
86
+
Asp
GTC
[ENA]
¡û
>W1710932203
LOIC01000015
Gammaproteobacteria
Photorhabdus namnaonensis luminescens [LOIC]
286
362
+
Asp
GTC
[ENA]
¡û
>W1710932230
LOIC01000053
Gammaproteobacteria
Photorhabdus namnaonensis luminescens [LOIC]
292
368
+
Asp
GTC
[ENA]
¡û
>W1710938480
LOMY01000007
Gammaproteobacteria
Photorhabdus australis subsp. australis [LOMY]
9
85
+
Asp
GTC
[ENA]
¡û
>W1710938506
LOMY01000088
Gammaproteobacteria
Photorhabdus australis subsp. australis [LOMY]
9
85
+
Asp
GTC
[ENA]
¡û
>W1711178342
LWGQ01000031
Gammaproteobacteria
Photorhabdus luminescens [LWGQ]
282
358
+
Asp
GTC
[ENA]
¡û
>W1711178393
LWGQ01000155
Gammaproteobacteria
Photorhabdus luminescens [LWGQ]
33254
33178
-
Asp
GTC
[ENA]
¡û
>W1711327266
MBJU01000036
Gammaproteobacteria
Photorhabdus temperata [MBJU]
80807
80731
-
Asp
GTC
[ENA]
¡û
>W1711327309
MBJU01000100
Gammaproteobacteria
Photorhabdus temperata [MBJU]
48938
48862
-
Asp
GTC
[ENA]
¡û
>W1711467076
MJNC01000002
Gammaproteobacteria
Buchnera aphidicola (Myzus persicae) [MJNC]
32013
32088
+
Asp
GTC
[ENA]
¡û
>W1711853416
MYFJ01000036
Gammaproteobacteria
Photorhabdus luminescens [MYFJ]
308
384
+
Asp
GTC
[ENA]
¡û
>W1711853428
MYFJ01000045
Gammaproteobacteria
Photorhabdus luminescens [MYFJ]
573
649
+
Asp
GTC
[ENA]
¡û
>C171018854
CP012849
Gammaproteobacteria
Candidatus Riesia sp. GBBU [CP012849]
159202
159278
+
Asp
GTC
-
¡û
>C171022171
CP013259
Gammaproteobacteria
Buchnera aphidicola [Diuraphis noxia] [CP013259]
277460
277533
+
Asp
GTC
-
¡û
>C016658
BX470251
Gammaproteobacteria
Photorhabdus laumondii [BX470251]
807474
807550
+
Asp
GTC
[Ensembl]
¡û
>C016692
BX470251
Gammaproteobacteria
Photorhabdus laumondii [BX470251]
5469654
5469578
-
Asp
GTC
[Ensembl]
¡û
>C026786
BA000021
Gammaproteobacteria
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis [BA000021]
141535
141608
+
Asp
GTC
[Ensembl]
¡û
>W141090682
AUXQ01000002
Gammaproteobacteria
Photorhabdus temperata subsp. temperata M1021 [AUXQ]
56878
56802
-
Asp
GTC
[ENA]
¡û
>W141090696
AUXQ01000009
Gammaproteobacteria
Photorhabdus temperata subsp. temperata M1021 [AUXQ]
130
206
+
Asp
GTC
[ENA]
¡û
>W141153927
AXDT01000155
Gammaproteobacteria
Photorhabdus temperata J3 [AXDT]
4020
3944
-
Asp
GTC
[ENA]
¡û
>W141153936
AXDT01000180
Gammaproteobacteria
Photorhabdus temperata J3 [AXDT]
305
381
+
Asp
GTC
[ENA]
¡û
>W141193795
AYSJ01000004
Gammaproteobacteria
Photorhabdus khanii subsp. khanii NC19 [AYSJ]
562299
562223
-
Asp
GTC
[ENA]
¡û
>W141193827
AYSJ01000015
Gammaproteobacteria
Photorhabdus khanii subsp. khanii NC19 [AYSJ]
152
228
+
Asp
GTC
[ENA]
¡û
>W141254044
CBST010000207
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae France [CBST]
28684
28760
+
Asp
GTC
[ENA]
¡û
>W141254106
CBSU010000210
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae Florida [CBSU]
4425
4501
+
Asp
GTC
[ENA]
¡û
>W141254152
CBSV010000150
Gammaproteobacteria
Xenorhabdus bovienii str. feltiae Moldova [CBSV]
21550
21474
-
Asp
GTC
[ENA]
¡û
>W141254221
CBSW010000231
Gammaproteobacteria
Xenorhabdus bovienii str. puntauvense [CBSW]
5199
5275
+
Asp
GTC
[ENA]
¡û
>W141254248
CBSX010000028
Gammaproteobacteria
Xenorhabdus bovienii str. oregonense [CBSX]
32654
32730
+
Asp
GTC
[ENA]
¡û
>W141254359
CBSY010000220
Gammaproteobacteria
Xenorhabdus bovienii str. kraussei Quebec [CBSY]
397
321
-
Asp
GTC
[ENA]
¡û
>W141254444
CBSZ010000438
Gammaproteobacteria
Xenorhabdus bovienii str. kraussei Becker Underwood [CBSZ]
5861
5937
+
Asp
GTC
[ENA]
¡û
>W141254461
CBTA010000070
Gammaproteobacteria
Xenorhabdus bovienii str. Jollieti [CBTA]
11235
11311
+
Asp
GTC
[ENA]
¡û
>W141254526
CBTB010000098
Gammaproteobacteria
Xenorhabdus bovienii str. Intermedium [CBTB]
216416
216340
-
Asp
GTC
[ENA]
¡û
>W141461924
JFGV01000021
Gammaproteobacteria
Photorhabdus aegyptia BA1 [JFGV]
72767
72691
-
Asp
GTC
[ENA]
¡û
>WENV170972113
MTKX01020214
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2321
2245
-
Asp
GTC
[ENA]
¢þ
>C181017141
CP015281
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii DSPV002N [CP015281]
807474
807550
+
Asp
GTC
-
¡û
>C181017175
CP015281
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii DSPV002N [CP015281]
5469651
5469575
-
Asp
GTC
-
¡û
>C181108023
CP024900
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii DJC [CP024900]
798319
798395
+
Asp
GTC
-
¡û
>C181108058
CP024900
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii DJC [CP024900]
5284167
5284091
-
Asp
GTC
-
¡û
>C181108101
CP024901
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii TT01 [CP024901]
807473
807549
+
Asp
GTC
-
¡û
>C181108135
CP024901
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii TT01 [CP024901]
5468352
5468276
-
Asp
GTC
-
¡û
>W141519999
JGVH01000038
Gammaproteobacteria
Photorhabdus temperata subsp. temperata Meg1 [JGVH]
83383
83307
-
Asp
GTC
[ENA]
¡û
>W141520021
JGVH01000073
Gammaproteobacteria
Photorhabdus temperata subsp. temperata Meg1 [JGVH]
18
94
+
Asp
GTC
[ENA]
¡û
>C191189776
LR025108
Gammaproteobacteria
Arsenophonus endosymbiont of Aleurodicus dispersus ARAD [LR025108]
174616
174692
+
Asp
GTC
-
¡û
>C09108320
FM162591
Gammaproteobacteria
Photorhabdus asymbiotica [FM162591]
765206
765282
+
Asp
GTC
[Ensembl]
¡û
>C09108355
FM162591
Gammaproteobacteria
Photorhabdus asymbiotica [FM162591]
4845261
4845185
-
Asp
GTC
[Ensembl]
¡û
>W1910657506
MASH01000012
Gammaproteobacteria
Arsenophonus endosymbiont of Bemisia tabaci of Bemisia tabaci Asia II 3 [MASH]
207
283
+
Asp
GTC
[ENA]
¡û
>W1910657544
MASH01000359
Gammaproteobacteria
Arsenophonus endosymbiont of Bemisia tabaci of Bemisia tabaci Asia II 3 [MASH]
185
261
+
Asp
GTC
[ENA]
¡û
>W1911071426
NMQR01000039
Gammaproteobacteria
Photorhabdus sp. CRCIA-P01 [NMQR]
39412
39336
-
Asp
GTC
[ENA]
¡û
>W1911071431
NMQR01000043
Gammaproteobacteria
Photorhabdus sp. CRCIA-P01 [NMQR]
34943
34867
-
Asp
GTC
[ENA]
¡û
>W1911237735
NSCD01000018
Gammaproteobacteria
Photorhabdus sp. S7-51 [NSCD]
86878
86802
-
Asp
GTC
[ENA]
¡û
>W1911237777
NSCD01000141
Gammaproteobacteria
Photorhabdus sp. S7-51 [NSCD]
1309
1233
-
Asp
GTC
[ENA]
¡û
>W1911237800
NSCE01000013
Gammaproteobacteria
Photorhabdus sp. S14-60 [NSCE]
99227
99151
-
Asp
GTC
[ENA]
¡û
>W1911237849
NSCE01000138
Gammaproteobacteria
Photorhabdus sp. S14-60 [NSCE]
1309
1233
-
Asp
GTC
[ENA]
¡û
>W1911237880
NSCF01000015
Gammaproteobacteria
Photorhabdus sp. S15-56 [NSCF]
99227
99151
-
Asp
GTC
[ENA]
¡û
>W1911237919
NSCF01000126
Gammaproteobacteria
Photorhabdus sp. S15-56 [NSCF]
1309
1233
-
Asp
GTC
[ENA]
¡û
>W1911237937
NSCG01000011
Gammaproteobacteria
Photorhabdus sp. S5P8-50 [NSCG]
131756
131680
-
Asp
GTC
[ENA]
¡û
>W1911237991
NSCG01000114
Gammaproteobacteria
Photorhabdus sp. S5P8-50 [NSCG]
1903
1827
-
Asp
GTC
[ENA]
¡û
>W1911238005
NSCH01000011
Gammaproteobacteria
Photorhabdus sp. S12-55 [NSCH]
133706
133630
-
Asp
GTC
[ENA]
¡û
>W1911238062
NSCH01000117
Gammaproteobacteria
Photorhabdus sp. S12-55 [NSCH]
1468
1392
-
Asp
GTC
[ENA]
¡û
>W1911238072
NSCI01000003
Gammaproteobacteria
Photorhabdus laumondii subsp. clarkei BOJ-47 [NSCI]
244744
244668
-
Asp
GTC
[ENA]
¡û
>W1911238099
NSCI01000017
Gammaproteobacteria
Photorhabdus laumondii subsp. clarkei BOJ-47 [NSCI]
115300
115224
-
Asp
GTC
[ENA]
¡û
>W1911238199
NSCJ01000107
Gammaproteobacteria
Photorhabdus sp. S10-54 [NSCJ]
2626
2550
-
Asp
GTC
[ENA]
¡û
>W1911238201
NSCJ01000143
Gammaproteobacteria
Photorhabdus sp. S10-54 [NSCJ]
1126
1050
-
Asp
GTC
[ENA]
¡û
>W1911238268
NSCK01000110
Gammaproteobacteria
Photorhabdus sp. S9-53 [NSCK]
2626
2550
-
Asp
GTC
[ENA]
¡û
>W1911238270
NSCK01000121
Gammaproteobacteria
Photorhabdus sp. S9-53 [NSCK]
2083
2007
-
Asp
GTC
[ENA]
¡û
>W1911238337
NSCL01000111
Gammaproteobacteria
Photorhabdus sp. S8-52 [NSCL]
2626
2550
-
Asp
GTC
[ENA]
¡û
>W1911238339
NSCL01000144
Gammaproteobacteria
Photorhabdus sp. S8-52 [NSCL]
1126
1050
-
Asp
GTC
[ENA]
¡û
>W1911238408
NSCM01000115
Gammaproteobacteria
Photorhabdus bodei LJ24-63 [NSCM]
1420
1344
-
Asp
GTC
[ENA]
¡û
>W1911238410
NSCM01000125
Gammaproteobacteria
Photorhabdus bodei LJ24-63 [NSCM]
1317
1241
-
Asp
GTC
[ENA]
¡û
>W1911238471
NSCN01000046
Gammaproteobacteria
Photorhabdus sp. HUG-39 [NSCN]
610
686
+
Asp
GTC
[ENA]
¡û
>W1911238479
NSCN01000080
Gammaproteobacteria
Photorhabdus sp. HUG-39 [NSCN]
630
706
+
Asp
GTC
[ENA]
¡û
>W1911632374
PUJX01000023
Gammaproteobacteria
Photorhabdus luminescens MEX47-22 [PUJX]
67267
67191
-
Asp
GTC
[ENA]
¡û
>W1911632382
PUJX01000029
Gammaproteobacteria
Photorhabdus luminescens MEX47-22 [PUJX]
59073
58997
-
Asp
GTC
[ENA]
¡û
>W1911632426
PUJY01000012
Gammaproteobacteria
Photorhabdus khanii MEX20-17 [PUJY]
83907
83983
+
Asp
GTC
[ENA]
¡û
>W1911632434
PUJY01000026
Gammaproteobacteria
Photorhabdus khanii MEX20-17 [PUJY]
321
397
+
Asp
GTC
[ENA]
¡û
>W1911632454
PUJY01000051
Gammaproteobacteria
Photorhabdus khanii MEX20-17 [PUJY]
321
397
+
Asp
GTC
[ENA]
¡û
>W1810339358
PUWT01000010
Gammaproteobacteria
Photorhabdus hindustanensis H1 [PUWT]
417
493
+
Asp
GTC
[ENA]
¡û
>W1810339376
PUWT01000032
Gammaproteobacteria
Photorhabdus hindustanensis H1 [PUWT]
474
550
+
Asp
GTC
[ENA]
¡û
>W1810339458
PUWU01000019
Gammaproteobacteria
Photorhabdus luminescens H3 [PUWU]
289
365
+
Asp
GTC
[ENA]
¡û
>W1810339478
PUWU01000037
Gammaproteobacteria
Photorhabdus luminescens H3 [PUWU]
52077
52001
-
Asp
GTC
[ENA]
¡û
>W1810339514
PUWV01000020
Gammaproteobacteria
Photorhabdus luminescens H4 [PUWV]
50
126
+
Asp
GTC
[ENA]
¡û
>W1810339524
PUWV01000031
Gammaproteobacteria
Photorhabdus luminescens H4 [PUWV]
65388
65312
-
Asp
GTC
[ENA]
¡û
>W1810339556
PUWW01000012
Gammaproteobacteria
Photorhabdus luminescens H5 [PUWW]
572
648
+
Asp
GTC
[ENA]
¡û
>W1810339603
PUWX01000001
Gammaproteobacteria
Photorhabdus luminescens H7 [PUWX]
113230
113154
-
Asp
GTC
[ENA]
¡û
>W1810339635
PUWX01000030
Gammaproteobacteria
Photorhabdus luminescens H7 [PUWX]
565
641
+
Asp
GTC
[ENA]
¡û
>W1810744626
QOVA01000023
Gammaproteobacteria
Edaphovirga cremea DSM 105170 [QOVA]
49970
49894
-
Asp
GTC
[ENA]
¡û
>C151003510
CP002697
Gammaproteobacteria
Buchnera aphidicola str. USDA [Myzus persicae] [CP002697]
279597
279672
+
Asp
GTC
[Ensembl]
¡û
>C151003542
CP002699
Gammaproteobacteria
Buchnera aphidicola str. W106 [Myzus persicae] [CP002699]
279597
279672
+
Asp
GTC
[Ensembl]
¡û
>C151003574
CP002701
Gammaproteobacteria
Buchnera aphidicola str. G002 [Myzus persicae] [CP002701]
279603
279678
+
Asp
GTC
[Ensembl]
¡û
>C151003606
CP002703
Gammaproteobacteria
Buchnera aphidicola str. F009 [Myzus persicae] [CP002703]
279597
279672
+
Asp
GTC
[Ensembl]
¡û
>C151076919
CP011104
Gammaproteobacteria
Photorhabdus thracensis DSM 15199 [CP011104]
1657855
1657779
-
Asp
GTC
[Ensembl]
¡û
>C151076933
CP011104
Gammaproteobacteria
Photorhabdus thracensis DSM 15199 [CP011104]
1056978
1056902
-
Asp
GTC
[Ensembl]
¡û
>C151098328
FO818637
Gammaproteobacteria
Xenorhabdus bovienii CS03 [FO818637]
1363298
1363374
+
Asp
GTC
[Ensembl]
¡û
>C10114148
FN667741
Gammaproteobacteria
Xenorhabdus bovienii SS-2004 [FN667741]
3031951
3032027
+
Asp
GTC
[Ensembl]
¡û
>C11102117
CP002648
Gammaproteobacteria
Buchnera aphidicola str. Ua [Uroleucon ambrosiae] [CP002648]
265112
265185
+
Asp
GTC
[Ensembl]
¡û
>C11116802
FM162591
Gammaproteobacteria
Photorhabdus asymbiotica [FM162591]
765206
765282
+
Asp
GTC
[Ensembl]
¡û
>C11116837
FM162591
Gammaproteobacteria
Photorhabdus asymbiotica [FM162591]
4845261
4845185
-
Asp
GTC
[Ensembl]
¡û
>W1511335011
JQOC01000003
Gammaproteobacteria
Photorhabdus luminescens LN2 [JQOC]
393926
393850
-
Asp
GTC
[ENA]
¡û
>W1511335015
JQOC01000006
Gammaproteobacteria
Photorhabdus luminescens LN2 [JQOC]
292
368
+
Asp
GTC
[ENA]
¡û
>W1511349378
JRLH01000006
Gammaproteobacteria
Candidatus Arsenophonus nilaparvatae str. Hangzhou of Nilaparvata lugens [JRLH]
99854
99778
-
Asp
GTC
[ENA]
¡û
>W1511401187
JTHJ02000024
Gammaproteobacteria
Photorhabdus luminescens NBAII HiPL101 [JTHJ]
11084
11160
+
Asp
GTC
[ENA]
¡û
>W1511510868
JXSK01000012
Gammaproteobacteria
Photorhabdus luminescens subsp. luminescens DSM 3368 [JXSK]
108128
108052
-
Asp
GTC
[ENA]
¡û
>W1511510877
JXSK01000013
Gammaproteobacteria
Photorhabdus luminescens subsp. luminescens DSM 3368 [JXSK]
102271
102195
-
Asp
GTC
[ENA]
¡û
>W1511512699
JXUR02000150
Gammaproteobacteria
Photorhabdus luminescens NBAII Hb105 [JXUR]
86
10
-
Asp
GTC
[ENA]
¡û
>W1610032527
AZAB02000546
Gammaproteobacteria
Photorhabdus luminescens NBAII H75HRPL105 [AZAB]
79
3
-
Asp
GTC
[ENA]
¡û
>W1610657245
LJPB01000082
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii [LJPB]
65005
64929
-
Asp
GTC
[ENA]
¡û
>W1610657271
LJPB01000175
Gammaproteobacteria
Photorhabdus laumondii subsp. laumondii [LJPB]
10
86
+
Asp
GTC
[ENA]
¡û
>W1610789734
LOIC01000015
Gammaproteobacteria
Photorhabdus namnaonensis luminescens [LOIC]
286
362
+
Asp
GTC
[ENA]
¡û
>W1610789761
LOIC01000053
Gammaproteobacteria
Photorhabdus namnaonensis luminescens [LOIC]
292
368
+
Asp
GTC
[ENA]
¡û
>W1610794604
LOMY01000007
Gammaproteobacteria
Photorhabdus australis subsp. australis [LOMY]
9
85
+
Asp
GTC
[ENA]
¡û
>W1610794630
LOMY01000088
Gammaproteobacteria
Photorhabdus australis subsp. australis [LOMY]
9
85
+
Asp
GTC
[ENA]
¡û
>W1610986389
LWGQ01000031
Gammaproteobacteria
Photorhabdus luminescens [LWGQ]
282
358
+
Asp
GTC
[ENA]
¡û
>W1610986440
LWGQ01000155
Gammaproteobacteria
Photorhabdus luminescens [LWGQ]
33254
33178
-
Asp
GTC
[ENA]
¡û
>W1710508739
FMWJ01000019
Gammaproteobacteria
Photorhabdus luminescens [FMWJ]
88516
88440
-
Asp
GTC
[ENA]
¡û
>W1710508754
FMWJ01000045
Gammaproteobacteria
Photorhabdus luminescens [FMWJ]
284
360
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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