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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.145492 (59 seq.)
>W1710777864
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
692374
692298
-
Arg
CCG
[ENA]
¡û
>W1710777912
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
667197
667121
-
Arg
CCG
[ENA]
¡û
>W1711303116
MAJM01000004
Gammaproteobacteria
Psychrobacter sp. B29-1 [MAJM]
19058
19134
+
Arg
CCG
[ENA]
¡û
>W1711683003
MRYC01000009
Gammaproteobacteria
Psychrobacter sp. C 20.9 [MRYC]
56410
56334
-
Arg
CCG
[ENA]
¡û
>C171019113
CP012969
Gammaproteobacteria
Psychrobacter sp. AntiMn-1 [CP012969]
1424174
1424250
+
Arg
CCG
-
¡û
>C171131095
LT799838
Gammaproteobacteria
Psychrobacter sp. DAB_AL43B [LT799838]
635609
635533
-
Arg
CCG
-
¡û
>W131180593
ARNF01000088
Gammaproteobacteria
Psychrobacter lutiphocae DSM 21542 [ARNF]
121765
121691
-
Arg
CCG
[ENA]
¡û
>C015837
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
531688
531612
-
Arg
CCG
[Ensembl]
¡û
>C016000
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
562705
562629
-
Arg
CCG
[Ensembl]
¡û
>WENV180101043
OAOU01000032
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
33239
33315
+
Arg
CCG
[ENA]
¢þ
>w003197
AADI01000001
Gammaproteobacteria
Psychrobacter arcticus 273-4 [AADI]
913455
913377
-
Arg
CCG
[ENA]
¡û
>W141086165
AUSW01000014
Gammaproteobacteria
Psychrobacter aquaticus CMS 56 [AUSW]
57011
56935
-
Arg
CCG
[ENA]
¡û
>WENV181201386
OERN01007010
[OERN] metagenome; water of meat washing
342
266
-
Arg
CCG
[ENA]
¢þ
>W141199941
AYXM01000032
Gammaproteobacteria
Psychrobacter sp. AC24 [AYXM]
64881
64805
-
Arg
CCG
[ENA]
¡û
>W141200522
AYXZ01000119
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
64760
64684
-
Arg
CCG
[ENA]
¡û
>W141200578
AYYA01000054
Gammaproteobacteria
Psychrobacter sp. TB67 [AYYA]
64881
64805
-
Arg
CCG
[ENA]
¡û
>C08007234
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
531688
531615
-
Arg
CCG
[Ensembl]
¡û
>W141233985
BAWG01000009
Gammaproteobacteria
Psychrobacter sp. JCM 18900 [BAWG]
97491
97567
+
Arg
CCG
[ENA]
¡û
>W141234021
BAWH01000016
Gammaproteobacteria
Psychrobacter sp. JCM 18901 [BAWH]
24668
24744
+
Arg
CCG
[ENA]
¡û
>W141234060
BAWI01000008
Gammaproteobacteria
Psychrobacter sp. JCM 18902 [BAWI]
16768
16692
-
Arg
CCG
[ENA]
¡û
>W141234103
BAWJ01000013
Gammaproteobacteria
Psychrobacter sp. JCM 18903 [BAWJ]
82188
82264
+
Arg
CCG
[ENA]
¡û
>WENV182542230
OJAV01014998
[OJAV] seawater metagenome; Sea water
192
116
-
Arg
CCG
[ENA]
¢þ
>WENV182549782
OJBZ01000015
[OJBZ] seawater metagenome; Sea water
60796
60872
+
Arg
CCG
[ENA]
¢þ
>WENV182562302
OJDZ01000590
[OJDZ] seawater metagenome; Sea water
16197
16273
+
Arg
CCG
[ENA]
¢þ
>WENV170121418
CENM01002889
[CENM] marine metagenome genome assembly TARA_032_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1996
1920
-
Arg
CCG
[ENA]
¢þ
>WENV170243487
CEQO01155718
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
540
464
-
Arg
CCG
[ENA]
¢þ
>WENV170563239
CZCB01012353
[CZCB] anaerobic digester metagenome; anaerobic digester
81
5
-
Arg
CCG
[ENA]
¢þ
>C181056056
CP022043
Gammaproteobacteria
Psychrobacter cryohalolentis FDAARGOS_308 [CP022043]
2327553
2327477
-
Arg
CCG
-
¡û
>C191163849
CP039251
Gammaproteobacteria
Psychrobacter sp. PAMC27889 [CP039251]
2578518
2578594
+
Arg
CCG
-
¡û
>W141701355
JMKP01000024
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 [JMKP]
16254
16178
-
Arg
CCG
[ENA]
¡û
>W09103317
AAJC01000012
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [AAJC]
24009
24085
+
Arg
CCG
[ENA]
¡û
>W1910372488
FUGD01000089
Gammaproteobacteria
Psychrobacter pasteurii CIP 110853 [FUGD]
30577
30653
+
Arg
CCG
[ENA]
¡û
>W1910372527
FUGE01000144
Gammaproteobacteria
Psychrobacter piechaudii CIP 110854 [FUGE]
412
336
-
Arg
CCG
[ENA]
¡û
>W1910377592
FUKN01000011
Gammaproteobacteria
Psychrobacter sp. JB385 [FUKN]
56268
56192
-
Arg
CCG
[ENA]
¡û
>W1910891772
NEXU01000062
Gammaproteobacteria
Psychrobacter sp. DAB_AL32B [NEXU]
3558
3634
+
Arg
CCG
[ENA]
¡û
>W1911203639
NRGY01000001
Gammaproteobacteria
Psychrobacter sp. JB193 [NRGY]
1055490
1055566
+
Arg
CCG
[ENA]
¡û
>W1810155463
PJAS01000057
Gammaproteobacteria
Psychrobacter sp. 4Bb [PJAS]
46038
45962
-
Arg
CCG
[ENA]
¡û
>W1810155521
PJAT01000143
Gammaproteobacteria
Psychrobacter sp. 4Dc [PJAT]
19556
19632
+
Arg
CCG
[ENA]
¡û
>W1810156194
PJBD01000061
Gammaproteobacteria
Psychrobacter sp. Choline-02u-13 [PJBD]
18931
19007
+
Arg
CCG
[ENA]
¡û
>W1810156353
PJBF01000063
Gammaproteobacteria
Psychrobacter sp. Choline-02u-9 [PJBF]
22105
22029
-
Arg
CCG
[ENA]
¡û
>W1810156423
PJBH01000054
Gammaproteobacteria
Psychrobacter sp. Choline-3u-12 [PJBH]
18776
18852
+
Arg
CCG
[ENA]
¡û
>W1810157256
PJBU01000092
Gammaproteobacteria
Psychrobacter sp. MES7-P7E [PJBU]
1704
1628
-
Arg
CCG
[ENA]
¡û
>W1810157421
PJBY01000084
Gammaproteobacteria
Psychrobacter sp. Sarcosine-3u-12 [PJBY]
16768
16692
-
Arg
CCG
[ENA]
¡û
>W1810596409
QGGM01000009
Gammaproteobacteria
Psychrobacter immobilis DSM 7229 [QGGM]
101407
101483
+
Arg
CCG
[ENA]
¡û
>W1810671445
QJSU01000009
Gammaproteobacteria
Psychrobacter fozii CECT 5889 [QJSU]
70035
69959
-
Arg
CCG
[ENA]
¡û
>W1810692685
QLKS01000005
Gammaproteobacteria
Psychrobacter proteolyticus HAMBI_2948 [QLKS]
94726
94802
+
Arg
CCG
[ENA]
¡û
>C151097243
CP012678
Gammaproteobacteria
Psychrobacter urativorans R10.10B [CP012678]
2067399
2067323
-
Arg
CCG
-
¡û
>W11163462
AFHU01000056
Gammaproteobacteria
Psychrobacter sp. 1501(2011) [AFHU]
48943
49019
+
Arg
CCG
[ENA]
¡û
>C161042766
CP012529
Gammaproteobacteria
Psychrobacter sp. P2G3 [CP012529]
656102
656026
-
Arg
CCG
-
¡û
>C161042814
CP012533
Gammaproteobacteria
Psychrobacter sp. P11G5 [CP012533]
646540
646464
-
Arg
CCG
[Ensembl]
¡û
>C161079296
CP014945
Gammaproteobacteria
Psychrobacter alimentarius PAMC 27889 [CP014945]
662993
662917
-
Arg
CCG
[Ensembl]
¡û
>W121043495
AHVZ01000007
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
55102
55026
-
Arg
CCG
[ENA]
¡û
>W1610071746
BCUH01000040
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
13942
13866
-
Arg
CCG
[ENA]
¡û
>C131017410
CP006265
Gammaproteobacteria
Psychrobacter sp. G [CP006265]
561134
561058
-
Arg
CCG
[Ensembl]
¡û
>W1610632748
LIQB01000007
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
85732
85656
-
Arg
CCG
[ENA]
¡û
>W1610642050
LJCE01000001
Gammaproteobacteria
Psychrobacter sp. P11F6 [LJCE]
692374
692298
-
Arg
CCG
[ENA]
¡û
>W1610642098
LJCF01000001
Gammaproteobacteria
Psychrobacter sp. P11G3 [LJCF]
667197
667121
-
Arg
CCG
[ENA]
¡û
>W1710068948
BCUH01000040
Gammaproteobacteria
Psychrobacter phenylpyruvicus DSM 7000 = NBRC 102152 [BCUH]
13942
13866
-
Arg
CCG
[ENA]
¡û
>W1710767180
LIQB01000007
Gammaproteobacteria
Psychrobacter glacincola [LIQB]
85732
85656
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK