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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146530 (11 seq.)
>WENV180097231
MTBK01175664
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
719
796
+
Arg
TCG
[ENA]
¡û
>WENV170562606
CZCB01003875
[CZCB] anaerobic digester metagenome; anaerobic digester
2129
2052
-
Arg
TCG
[ENA]
¡û
>WENV170643715
JMBV01000229
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
18978
19055
+
Arg
TCG
[ENA]
¡û
>WENV170644408
JMBW01011112
[JMBW] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
686
763
+
Arg
TCG
[ENA]
¡û
>WENV170645034
JMBX01001537
[JMBX] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
1619
1696
+
Arg
TCG
[ENA]
¡û
>WENV170684544
LFRM01045320
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2006
1929
-
Arg
TCG
[ENA]
¡û
>WENV170720195
LSQX01144608
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
7656
7579
-
Arg
TCG
[ENA]
¡û
>WENV170969142
MTKW01021436
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
3306
3383
+
Arg
TCG
[ENA]
¡û
>C151104221
LN824141
Thermotogota
Defluviitoga tunisiensis [LN824141]
1292536
1292459
-
Arg
TCG
[Ensembl]
¡û
>W1610606946
LFTL01000017
Thermotogota
Thermotogaceae bacterium DTU111 [LFTL]
2006
1929
-
Arg
TCG
[ENA]
¡û
>W1710728233
LFTL01000017
Thermotogota
Thermotogaceae bacterium DTU111 [LFTL]
2006
1929
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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