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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146683 (15 seq.)
>WENV181408612
OGCH01006613
[OGCH] hot springs metagenome; hot springs
2787
2713
-
Ile
GAT
[ENA]
¡û
>WENV181408679
OGCH01008198
[OGCH] hot springs metagenome; hot springs
2328
2254
-
Ile
GAT
[ENA]
¡û
>WENV181408768
OGCH01012707
[OGCH] hot springs metagenome; hot springs
76
2
-
Ile
GAT
[ENA]
¡û
>W1610018579
AQTB01000040
Nitrososphaerota
Aigarchaeota archaeon SCGC AAA471-D15 [AQTB]
10575
10501
-
Ile
GAT
[ENA]
¡û
>W1610018906
AQYL01000034
Nitrososphaerota
Aigarchaeota archaeon SCGC AAA471-A16 [AQYL]
5628
5702
+
Ile
GAT
[ENA]
¡û
>W1610020415
ASLU01000005
Nitrososphaerota
Aigarchaeota archaeon SCGC AAA471-E16 [ASLU]
32698
32772
+
Ile
GAT
[ENA]
¡û
>W1610020429
ASLW01000006
Nitrososphaerota
Aigarchaeota archaeon SCGC AAA471-J07 [ASLW]
7501
7427
-
Ile
GAT
[ENA]
¡û
>W1610020433
ASLX01000003
Nitrososphaerota
Aigarchaeota archaeon SCGC AAA471-J08 [ASLX]
13493
13567
+
Ile
GAT
[ENA]
¡û
>W1610020567
ASPD01000007
Nitrososphaerota
Candidatus Calditenuaceae archaeon SCGC AAA471-F17 [ASPD]
14635
14709
+
Ile
GAT
[ENA]
¡û
>W1610020576
ASPE01000002
Nitrososphaerota
Aigarchaeota archaeon SCGC AAA471-I13 [ASPE]
5830
5904
+
Ile
GAT
[ENA]
¡û
>W1610028346
AWOD01000014
Nitrososphaerota
Thaumarchaeota archaeon JGI OTU-2 [AWOD]
10575
10501
-
Ile
GAT
[ENA]
¡û
>W1610028362
AWOE01000022
Nitrososphaerota
Candidatus Calditenuaceae archaeon JGI OTU-1 [AWOE]
24952
24878
-
Ile
GAT
[ENA]
¡û
>W1610028363
AWOE01000029
Nitrososphaerota
Candidatus Calditenuaceae archaeon JGI OTU-1 [AWOE]
1256
1330
+
Ile
GAT
[ENA]
¡û
>W1610028372
AWOE01000088
Nitrososphaerota
Candidatus Calditenuaceae archaeon JGI OTU-1 [AWOE]
98
172
+
Ile
GAT
[ENA]
¡û
>W1610028379
AWOF01000016
Nitrososphaerota
Thaumarchaeota archaeon JGI OTU-4 [AWOF]
5628
5702
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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