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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146908 (86 seq.)
>W1710864949
LMGH01000001
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
1321917
1321993
+
Pro
GGG
[ENA]
¡û
>W1710865877
LMHA01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
235519
235443
-
Pro
GGG
[ENA]
¡û
>W1710866698
LMHR01000081
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
71413
71337
-
Pro
GGG
[ENA]
¡û
>W1710868943
LMJN01000001
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
1376202
1376278
+
Pro
GGG
[ENA]
¡û
>W1710880633
LMSL01000041
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
234161
234085
-
Pro
GGG
[ENA]
¡û
>W1711009474
LQQS01000103
Gammaproteobacteria
Stenotrophomonas maltophilia [LQQS]
70608
70684
+
Pro
GGG
[ENA]
¡û
>W1711147412
LVJP01003773
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
19748
19672
-
Pro
GGG
[ENA]
¡û
>W1711147456
LVJQ01002695
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
5363
5439
+
Pro
GGG
[ENA]
¡û
>W1711147458
LVJQ01002736
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
4783
4859
+
Pro
GGG
[ENA]
¡û
>W1711147502
LVJR01000029
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
184586
184510
-
Pro
GGG
[ENA]
¡û
>W1711147529
LVJS01000038
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
38254
38330
+
Pro
GGG
[ENA]
¡û
>W1711147600
LVJT01000104
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
39394
39470
+
Pro
GGG
[ENA]
¡û
>W1711147629
LVJU01000027
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
182953
182877
-
Pro
GGG
[ENA]
¡û
>W1711147683
LVJV01001326
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
3954
4030
+
Pro
GGG
[ENA]
¡û
>W1711147693
LVJV01001511
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
4723
4799
+
Pro
GGG
[ENA]
¡û
>W1711220357
LXQJ01000032
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
22760
22684
-
Pro
GGG
[ENA]
¡û
>W1711386244
MEFB01000037
Gammaproteobacteria
Rhodanobacter sp. SCN 67-45 [MEFB]
22709
22785
+
Pro
GGG
[ENA]
¡û
>W1711421696
MHZQ01000189
Gammaproteobacteria
Rhodanobacter sp. RIFOXYA1_FULL_67_6 [MHZQ]
212
136
-
Pro
GGG
[ENA]
¡û
>W1711503642
MKTU01000026
Gammaproteobacteria
Rhodanobacter sp. 67-28 [MKTU]
90147
90223
+
Pro
GGG
[ENA]
¡û
>W1711699857
MSLW01000031
Gammaproteobacteria
Stenotrophomonas sp. MB339 [MSLW]
7912
7836
-
Pro
GGG
[ENA]
¡û
>W1711751492
MUNU01000015
Gammaproteobacteria
Rhodanobacter sp. B05 [MUNU]
40070
40146
+
Pro
GGG
[ENA]
¡û
>C171046796
CP016294
Gammaproteobacteria
Stenotrophomonas rhizophila QL-P4 [CP016294]
2900402
2900326
-
Pro
GGG
-
¡û
>C171050518
CP016756
Gammaproteobacteria
Stenotrophomonas nitritireducens 2001 [CP016756]
598881
598805
-
Pro
GGG
-
¡û
>W131046203
AMSF01000082
Gammaproteobacteria
Dyella ginsengisoli LA-4 [AMSF]
37545
37469
-
Pro
GGG
[ENA]
¡û
>W131218948
ATYD01000110
Gammaproteobacteria
Rhodanobacter sp. OR444 [ATYD]
380
304
-
Pro
GGG
[ENA]
¡û
>W131219045
ATYF01000012
Gammaproteobacteria
Rhodanobacter sp. OR92 [ATYF]
353597
353521
-
Pro
GGG
[ENA]
¡û
>W141151898
AXBJ01000012
Gammaproteobacteria
Rhodanobacter sp. OR87 [AXBJ]
73245
73321
+
Pro
GGG
[ENA]
¡û
>WENV181732055
OGQD01009147
[OGQD] human gut metagenome; faeces
1834
1758
-
Pro
GGG
[ENA]
¢þ
>W141258830
CBXW010000009
Gammaproteobacteria
Stenotrophomonas indicatrix SeITE02 [CBXW]
131005
131081
+
Pro
GGG
[ENA]
¡û
>WENV182944083
OKVI01003455
[OKVI] human gut metagenome; human gut
1932
2008
+
Pro
GGG
[ENA]
¢þ
>WENV183725730
PJQF01011064
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
133
57
-
Pro
GGG
[ENA]
¢þ
>WENV170680746
LFEF01017246
[LFEF] freshwater metagenome; waterbloom
828
752
-
Pro
GGG
[ENA]
¢þ
>WENV170708113
LNAP01050806
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
706
630
-
Pro
GGG
[ENA]
¢þ
>C191113019
CP033829
Gammaproteobacteria
Stenotrophomonas maltophilia FDAARGOS_507 [CP033829]
2830332
2830256
-
Pro
GGG
-
¡û
>C191154195
CP037883
Gammaproteobacteria
Stenotrophomonas indicatrix DAIF1 [CP037883]
3165846
3165770
-
Pro
GGG
-
¡û
>W1910648978
LXXW01000055
Gammaproteobacteria
Stenotrophomonas maltophilia SM-1389 [LXXW]
29580
29504
-
Pro
GGG
[ENA]
¡û
>W1910787216
MQXB01000072
Gammaproteobacteria
Stenotrophomonas maltophilia CV_2006_STM2 [MQXB]
56457
56381
-
Pro
GGG
[ENA]
¡û
>W1910788590
MQXW01000025
Gammaproteobacteria
Stenotrophomonas maltophilia TG_2008_STM1 [MQXW]
159270
159194
-
Pro
GGG
[ENA]
¡û
>W1910789614
MQYL01000061
Gammaproteobacteria
Stenotrophomonas maltophilia Fma_2010_STM2 [MQYL]
38745
38821
+
Pro
GGG
[ENA]
¡û
>W1910789821
MQYO01000083
Gammaproteobacteria
Stenotrophomonas maltophilia AV_2006 [MQYO]
39792
39868
+
Pro
GGG
[ENA]
¡û
>W1910810603
MULR01000174
Gammaproteobacteria
Stenotrophomonas geniculata 95 [MULR]
22926
23002
+
Pro
GGG
[ENA]
¡û
>W1910821926
MWIO01000013
Gammaproteobacteria
Rhodanobacter lindaniclasticus DSM 17932 [MWIO]
75776
75700
-
Pro
GGG
[ENA]
¡û
>W1910887611
NEQZ01000014
Gammaproteobacteria
Stenotrophomonas maltophilia E539 [NEQZ]
677472
677396
-
Pro
GGG
[ENA]
¡û
>W1911492889
OBEE01000010
Gammaproteobacteria
Stenotrophomonas sp. CC120223-11 [OBEE]
115166
115242
+
Pro
GGG
[ENA]
¡û
>W1810071380
PEER01000011
Gammaproteobacteria
Rhodanobacter sp. TND4EH1 [PEER]
362470
362394
-
Pro
GGG
[ENA]
¡û
>W1810402552
PYHM01000001
Gammaproteobacteria
Stenotrophomonas maltophilia 15180 [PYHM]
221462
221386
-
Pro
GGG
[ENA]
¡û
>W1810514384
QBUW01000012
Gammaproteobacteria
Rhodanobacter thiooxydans CR1 [QBUW]
50617
50693
+
Pro
GGG
[ENA]
¡û
>W1810591477
QFTK01000021
Gammaproteobacteria
Stenotrophomonas maltophilia D5_25A [QFTK]
18005
17929
-
Pro
GGG
[ENA]
¡û
>W1810591920
QFWQ01000003
Gammaproteobacteria
Rhodanobacter denitrificans Yn1 [QFWQ]
639338
639262
-
Pro
GGG
[ENA]
¡û
>ENV09004027
ADIG01001045
Groundwater metagenome 4000601.lucy.pga.C1
52423
52499
+
Pro
GGG
[ENA]
¡û
>W1511347144
JRJA01000025
Gammaproteobacteria
Stenotrophomonas maltophilia 53 [JRJA]
39823
39899
+
Pro
GGG
[ENA]
¡û
>W1511438361
JUMG01000026
Gammaproteobacteria
Stenotrophomonas maltophilia 952_SMAL [JUMG]
11934
11858
-
Pro
GGG
[ENA]
¡û
>W1511459219
JVKE01000135
Gammaproteobacteria
Stenotrophomonas maltophilia 36_SMAL [JVKE]
22891
22967
+
Pro
GGG
[ENA]
¡û
>W1511469833
JVVX01000288
Gammaproteobacteria
Stenotrophomonas maltophilia 1275_SMAL [JVVX]
22291
22367
+
Pro
GGG
[ENA]
¡û
>W1511472737
JVZQ01000122
Gammaproteobacteria
Stenotrophomonas maltophilia 1189_SMAL [JVZQ]
12598
12522
-
Pro
GGG
[ENA]
¡û
>W1511473727
JWAT01000099
Gammaproteobacteria
Stenotrophomonas maltophilia 1162_SMAL [JWAT]
16904
16828
-
Pro
GGG
[ENA]
¡û
>W11180906
AGIL01000010
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [AGIL]
124117
124193
+
Pro
GGG
[ENA]
¡û
>C161031540
CP011129
Gammaproteobacteria
Lysobacter antibioticus 76 [CP011129]
1974109
1974185
+
Pro
GGG
[Ensembl]
¡û
>C161078251
CP014841
Gammaproteobacteria
Dyella thiooxydans ATSB10 [CP014841]
2164104
2164028
-
Pro
GGG
[Ensembl]
¡û
>W121071187
AJXS01000213
Gammaproteobacteria
Rhodanobacter sp. 115 [AJXS]
8422
8346
-
Pro
GGG
[ENA]
¡û
>W121071226
AJXT01000004
Gammaproteobacteria
Rhodanobacter spathiphylli B39 [AJXT]
48364
48440
+
Pro
GGG
[ENA]
¡û
>W121071349
AJXV01000041
Gammaproteobacteria
Rhodanobacter denitrificans 116-2 [AJXV]
35588
35664
+
Pro
GGG
[ENA]
¡û
>W121071402
AJXW01000069
Gammaproteobacteria
Rhodanobacter thiooxydans LCS2 [AJXW]
33025
32949
-
Pro
GGG
[ENA]
¡û
>C131003703
CP003470
Gammaproteobacteria
Rhodanobacter denitrificans 2APBS1 [CP003470]
1159918
1159994
+
Pro
GGG
-
¡û
>W1610587057
LDJL01000011
Gammaproteobacteria
Pseudoxanthomonas dokdonensis [LDJL]
500673
500597
-
Pro
GGG
[ENA]
¡û
>W1610727295
LMGH01000001
Gammaproteobacteria
Rhodanobacter sp. Root561 [LMGH]
1321917
1321993
+
Pro
GGG
[ENA]
¡û
>W1610728223
LMHA01000001
Gammaproteobacteria
Pseudoxanthomonas sp. Root65 [LMHA]
235519
235443
-
Pro
GGG
[ENA]
¡û
>W1610729044
LMHR01000081
Gammaproteobacteria
Rhodanobacter sp. Root179 [LMHR]
71413
71337
-
Pro
GGG
[ENA]
¡û
>W1610731289
LMJN01000001
Gammaproteobacteria
Lysobacter sp. Root96 [LMJN]
1376202
1376278
+
Pro
GGG
[ENA]
¡û
>W1610742979
LMSL01000041
Gammaproteobacteria
Frateuria sp. Soil773 [LMSL]
234161
234085
-
Pro
GGG
[ENA]
¡û
>W1610857994
LQQS01000103
Gammaproteobacteria
Stenotrophomonas maltophilia [LQQS]
70608
70684
+
Pro
GGG
[ENA]
¡û
>W1610958365
LVJP01003773
Gammaproteobacteria
Rhodanobacter denitrificans [LVJP]
19748
19672
-
Pro
GGG
[ENA]
¡û
>W1610958409
LVJQ01002695
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
5363
5439
+
Pro
GGG
[ENA]
¡û
>W1610958411
LVJQ01002736
Gammaproteobacteria
Rhodanobacter sp. FW104-R5 [LVJQ]
4783
4859
+
Pro
GGG
[ENA]
¡û
>W1610958455
LVJR01000029
Gammaproteobacteria
Rhodanobacter sp. FW104-R8 [LVJR]
184586
184510
-
Pro
GGG
[ENA]
¡û
>W1610958482
LVJS01000038
Gammaproteobacteria
Rhodanobacter thiooxydans [LVJS]
38254
38330
+
Pro
GGG
[ENA]
¡û
>W1610958553
LVJT01000104
Gammaproteobacteria
Rhodanobacter sp. FW510-T8 [LVJT]
39394
39470
+
Pro
GGG
[ENA]
¡û
>W1610958582
LVJU01000027
Gammaproteobacteria
Rhodanobacter sp. FW510-R10 [LVJU]
182953
182877
-
Pro
GGG
[ENA]
¡û
>W1610958636
LVJV01001326
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
3954
4030
+
Pro
GGG
[ENA]
¡û
>W1610958646
LVJV01001511
Gammaproteobacteria
Rhodanobacter sp. FW510-R12 [LVJV]
4723
4799
+
Pro
GGG
[ENA]
¡û
>W1611004829
LXQJ01000032
Gammaproteobacteria
Luteimonas sp. ANT-B3E [LXQJ]
22760
22684
-
Pro
GGG
[ENA]
¡û
>W1710541137
FNYC01000001
Gammaproteobacteria
Frateuria terrea [FNYC]
521908
521832
-
Pro
GGG
[ENA]
¡û
>W1710567373
FOSR01000017
Gammaproteobacteria
Rhodanobacter glycinis [FOSR]
3989
3913
-
Pro
GGG
[ENA]
¡û
>W1710573371
FOXL01000002
Gammaproteobacteria
Frateuria terrea [FOXL]
521653
521577
-
Pro
GGG
[ENA]
¡û
>W1710605104
FWEU01000001
Gammaproteobacteria
Stenotrophomonas indicatrix 92mfcol6.1 [FWEU]
349117
349193
+
Pro
GGG
[ENA]
¡û
>W1710706187
LDJL01000011
Gammaproteobacteria
Pseudoxanthomonas dokdonensis [LDJL]
500673
500597
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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