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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146956 (73 seq.)
>W1710863395
LMFC01000001
Actinomycetota
Cellulomonas sp. Root485 [LMFC]
301332
301406
+
Met
CAT
[ENA]
¡û
>W1710867117
LMIA01000001
Actinomycetota
Nocardioides sp. Root190 [LMIA]
322426
322352
-
Met
CAT
[ENA]
¡û
>W1710867764
LMIO01000001
Actinomycetota
Leifsonia sp. Root227 [LMIO]
367582
367658
+
Met
CAT
[ENA]
¡û
>W1710870307
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
930773
930697
-
Met
CAT
[ENA]
¡û
>W1710872332
LMLX01000001
Actinomycetota
Agreia sp. Leaf244 [LMLX]
475765
475689
-
Met
CAT
[ENA]
¡û
>W1710873138
LMMO01000003
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
73835
73911
+
Met
CAT
[ENA]
¡û
>W1710873964
LMNF01000001
Actinomycetota
Agreia sp. Leaf283 [LMNF]
479251
479175
-
Met
CAT
[ENA]
¡û
>W1710875737
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
336747
336823
+
Met
CAT
[ENA]
¡û
>W1710876048
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
573020
573096
+
Met
CAT
[ENA]
¡û
>W1710876249
LMPB01000002
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
1071098
1071022
-
Met
CAT
[ENA]
¡û
>W1710877702
LMQI01000003
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
236814
236888
+
Met
CAT
[ENA]
¡û
>W1710893851
LNFD01000396
Actinomycetota
Actinomycetales bacterium Ga0077552 [LNFD]
322
398
+
Met
CAT
[ENA]
¡û
>W1711492187
MKKE01000036
Actinomycetota
Saccharomonospora sp. CUA-673 [MKKE]
32800
32726
-
Met
CAT
[ENA]
¡û
>W1711503114
MKTI01000003
Actinomycetota
Cellulomonas sp. 73-145 [MKTI]
158191
158265
+
Met
CAT
[ENA]
¡û
>W1711724848
MTQN01000012
Actinomycetota
Kribbella sp. ALI-6-A [MTQN]
2263808
2263886
+
Met
CAT
[ENA]
¡û
>W1711961745
NCSR01000005
Actinomycetota
Leifsonia sp. NCR5 [NCSR]
108100
108026
-
Met
CAT
[ENA]
¡û
>W131159366
AQUZ01000015
Actinomycetota
Kribbella catacumbae DSM 19601 [AQUZ]
94311
94237
-
Met
CAT
[ENA]
¡û
>W131227097
AUEW01000012
Actinomycetota
Cellulomonas sp. URHD0024 [AUEW]
63778
63702
-
Met
CAT
[ENA]
¡û
>W131229388
AUGT01000017
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
104035
104111
+
Met
CAT
[ENA]
¡û
>WENV180250486
OBEQ010286722
[OBEQ] groundwater metagenome; groundwater
251
177
-
Met
CAT
[ENA]
¢þ
>WENV180317970
OBKL01016476
[OBKL] soil metagenome; Alaskan Permafrost
229
305
+
Met
CAT
[ENA]
¢þ
>WENV180690560
OCZS010011020
[OCZS] soil metagenome; soil
2969
2895
-
Met
CAT
[ENA]
¢þ
>WENV181308521
OFIS01054088
[OFIS] sludge metagenome; sludge
69
144
+
Met
CAT
[ENA]
¢þ
>W141223015
BACW01000531
Actinomycetota
Curtobacterium sp. B8 [BACW]
23089
23163
+
Met
CAT
[ENA]
¡û
>W141279306
JAGF01000001
Actinomycetota
Cellulomonas sp. KRMCY2 [JAGF]
2077952
2078028
+
Met
CAT
[ENA]
¡û
>WENV183734865
PJUA01000063
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
64330
64405
+
Met
CAT
[ENA]
¢þ
>WENV183736167
PJUC01000080
[PJUC] soil metagenome; Soil enriched on filter paper
24011
24086
+
Met
CAT
[ENA]
¢þ
>W141428892
JEOE01000017
Actinomycetota
Cellulomonas sp. HZM [JEOE]
41319
41395
+
Met
CAT
[ENA]
¡û
>WENV170760576
LUMT01026302
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
734
658
-
Met
CAT
[ENA]
¢þ
>C191104250
CP033325
Actinomycetota
Georgenia faecalis ZLJ0423 [CP033325]
2895716
2895641
-
Met
CAT
-
¡û
>C191210045
LR134387
Actinomycetota
Cellulomonas fimi NCTC7547 [LR134387]
1069749
1069824
+
Met
CAT
-
¡û
>W141564146
JIAN01000005
Actinomycetota
Cellulomonas sp. URHE0023 [JIAN]
343990
343914
-
Met
CAT
[ENA]
¡û
>W141731251
JNIY01000003
Actinomycetota
Paraoerskovia marina DSM 21750 [JNIY]
671961
672037
+
Met
CAT
[ENA]
¡û
>W09109247
ABUC01000001
Actinomycetota
Kribbella flavida DSM 17836 [ABUC]
752348
752270
-
Met
CAT
[ENA]
¡û
>W1910155485
BIMR01000177
Actinomycetota
Cellulomonas biazotea NBRC12680 [BIMR]
11001
11076
+
Met
CAT
[ENA]
¡û
>W1910181117
BJLR01000002
Actinomycetota
Cellulomonas cellasea NBRC 3753 [BJLR]
25949
25874
-
Met
CAT
[ENA]
¡û
>SRA1003705
SRR002327.134032
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
95
19
-
Met
CAT
[SRA]
>W1810281995
PSXW01000011
Actinomycetota
Clavibacter michiganensis AY2B8 [PSXW]
115586
115660
+
Met
CAT
[ENA]
¡û
>W1810568813
QEES01000002
Actinomycetota
Cellulomonas sp. WB94 [QEES]
808253
808178
-
Met
CAT
[ENA]
¡û
>W1810592404
QFXK01000091
Actinomycetota
Kribbella monticola NEAU-SW521 [QFXK]
140487
140565
+
Met
CAT
[ENA]
¡û
>W1810657158
QJHB01000004
Actinomycetota
Homoserinimonas sp. OAct 916 [QJHB]
253437
253363
-
Met
CAT
[ENA]
¡û
>W1810918532
QWKP01000183
Actinomycetota
Cellulomonas rhizosphaerae NEAU-TCZ24 [QWKP]
5095
5019
-
Met
CAT
[ENA]
¡û
>SRA1014494
SRR023845.163944
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
87
163
+
Met
CAT
[SRA]
>SRA1015277
SRR023845.536609
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
85
9
-
Met
CAT
[SRA]
>ENV09001031
ABSQ01018935
Freshwater sediment metagenome lwMethenol_C1
658
582
-
Met
CAT
[ENA]
¡û
>C10107965
CP001736
Actinomycetota
Kribbella flavida DSM 17836 [CP001736]
6631859
6631781
-
Met
CAT
[Ensembl]
¡û
>C11105016
CP002666
Actinomycetota
Cellulomonas fimi ATCC 484 [CP002666]
1069745
1069821
+
Met
CAT
[Ensembl]
¡û
>W1511524523
JYFC01000006
Actinomycetota
Agreia bicolorata VKM Ac-1804 [JYFC]
198832
198908
+
Met
CAT
[ENA]
¡û
>W1511691444
LFYU01001660
Actinomycetota
Leifsonia xyli subsp. xyli GXBZ01 [LFYU]
267
341
+
Met
CAT
[ENA]
¡û
>C161073136
CP014513
Actinomycetota
Frondihabitans sp. PAMC 28766 [CP014513]
4002601
4002527
-
Met
CAT
[Ensembl]
¡û
>W1610029821
AXNT01000047
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
15088
15012
-
Met
CAT
[ENA]
¡û
>W1610051509
BBGX01000497
Actinomycetota
Cellulomonas xylanilytica JCM 14281 [BBGX]
291
365
+
Met
CAT
[ENA]
¡û
>W1610051572
BBGZ01000855
Actinomycetota
Cellulomonas terrae JCM 14899 [BBGZ]
320
394
+
Met
CAT
[ENA]
¡û
>W1610630606
LIIN01000017
Actinomycetota
Rathayibacter tanaceti [LIIN]
11642
11718
+
Met
CAT
[ENA]
¡û
>W1610725741
LMFC01000001
Actinomycetota
Cellulomonas sp. Root485 [LMFC]
301332
301406
+
Met
CAT
[ENA]
¡û
>W1610730110
LMIO01000001
Actinomycetota
Leifsonia sp. Root227 [LMIO]
367582
367658
+
Met
CAT
[ENA]
¡û
>W1610732653
LMKK01000001
Actinomycetota
Agreia sp. Leaf210 [LMKK]
930773
930697
-
Met
CAT
[ENA]
¡û
>W1610734678
LMLX01000001
Actinomycetota
Agreia sp. Leaf244 [LMLX]
475765
475689
-
Met
CAT
[ENA]
¡û
>W1610735484
LMMO01000003
Actinomycetota
Frigoribacterium sp. Leaf263 [LMMO]
73835
73911
+
Met
CAT
[ENA]
¡û
>W1610736310
LMNF01000001
Actinomycetota
Agreia sp. Leaf283 [LMNF]
479251
479175
-
Met
CAT
[ENA]
¡û
>W1610738083
LMOQ01000001
Actinomycetota
Agreia sp. Leaf335 [LMOQ]
336747
336823
+
Met
CAT
[ENA]
¡û
>W1610738394
LMOX01000001
Actinomycetota
Frigoribacterium sp. Leaf164 [LMOX]
573020
573096
+
Met
CAT
[ENA]
¡û
>W1610738595
LMPB01000002
Actinomycetota
Frigoribacterium sp. Leaf172 [LMPB]
1071098
1071022
-
Met
CAT
[ENA]
¡û
>W1610740048
LMQI01000003
Actinomycetota
Cellulomonas sp. Leaf395 [LMQI]
236814
236888
+
Met
CAT
[ENA]
¡û
>W1610754117
LNFD01000396
Actinomycetota
Actinomycetales bacterium Ga0077552 [LNFD]
322
398
+
Met
CAT
[ENA]
¡û
>W1710027149
AXNT01000047
Actinomycetota
Cellulomonas cellasea DSM 20118 [AXNT]
15088
15012
-
Met
CAT
[ENA]
¡û
>W1710047887
BBGX01000497
Actinomycetota
Cellulomonas xylanilytica JCM 14281 [BBGX]
291
365
+
Met
CAT
[ENA]
¡û
>W1710047950
BBGZ01000855
Actinomycetota
Cellulomonas terrae JCM 14899 [BBGZ]
320
394
+
Met
CAT
[ENA]
¡û
>W1710564138
FOQG01000008
Actinomycetota
Nocardioides psychrotolerans [FOQG]
59119
59045
-
Met
CAT
[ENA]
¡û
>W1710602482
FUYG01000001
Actinomycetota
Agreia bicolorata VKM Ac-2052 [FUYG]
423666
423742
+
Met
CAT
[ENA]
¡û
>W1710608513
FXAY01000001
Actinomycetota
Agreia pratensis [FXAY]
749669
749593
-
Met
CAT
[ENA]
¡û
>W1710609282
FXWI01000001
Actinomycetota
Agreia sp. VKM Ac-1783 [FXWI]
90630
90706
+
Met
CAT
[ENA]
¡û
>W1710761745
LIIN01000017
Actinomycetota
Rathayibacter tanaceti [LIIN]
11642
11718
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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