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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.146961 (72 seq.)
>W1710872501
LMMA01000023
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
424721
424646
-
His
GTG
[ENA]
¡û
>W1710877174
LMPW01000012
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
763675
763750
+
His
GTG
[ENA]
¡û
>W1711138920
LVEN01000035
Bacteroidota
Flavobacterium piscis [LVEN]
237813
237738
-
His
GTG
[ENA]
¡û
>W1711352952
MDDP01000024
Bacteroidota
Cellulophaga omnivescoria W5C [MDDP]
10317
10242
-
His
GTG
[ENA]
¡û
>W131237967
AUSH01000086
Bacteroidota
Bacteroidetes bacterium SCGC AAA027-N21 [AUSH]
241786
241861
+
His
GTG
[ENA]
¡û
>W1711413534
MGWH01000005
Bacteroidota
Flavobacteria bacterium GWA2_35_26 [MGWH]
137265
137340
+
His
GTG
[ENA]
¡û
>W131229159
AUGO01000009
Bacteroidota
Flavobacterium soli DSM 19725 [AUGO]
230361
230287
-
His
GTG
[ENA]
¡û
>W1711505184
MKVG01000007
Bacteroidota
Flavobacterium sp. 38-13 [MKVG]
124517
124442
-
His
GTG
[ENA]
¡û
>W1711582055
MNUW01000136
Bacteroidota
Flavobacteriaceae bacterium CG1_02_35_72 [MNUW]
58352
58277
-
His
GTG
[ENA]
¡û
>W1711748534
MULJ01000001
Bacteroidota
Flavobacterium sp. KBS0721 [MULJ]
441750
441675
-
His
GTG
[ENA]
¡û
>W1711751615
MUNX01000039
Bacteroidota
Flavobacterium sp. A45 [MUNX]
8457
8382
-
His
GTG
[ENA]
¡û
>C171036271
CP015172
Bacteroidota
Cellulophaga lytica DAU203 [CP015172]
3812622
3812547
-
His
GTG
-
¡û
>C171067635
CP017774
Bacteroidota
Flavobacterium commune PK15 [CP017774]
2881032
2881107
+
His
GTG
-
¡û
>WENV180381110
OBOR01129998
[OBOR] marine metagenome; ENVO 00002227
127
52
-
His
GTG
[ENA]
¢þ
>WENV180391062
OBPM01004441
[OBPM] marine metagenome; ENVO:00002010
1042
968
-
His
GTG
[ENA]
¢þ
>W141067197
ARZX01000011
Bacteroidota
Cellulophaga geojensis KL-A [ARZX]
75145
75220
+
His
GTG
[ENA]
¡û
>WENV181383914
OFRH01000753
[OFRH] wastewater metagenome; Exp Tend NO 100WW
3038
2964
-
His
GTG
[ENA]
¢þ
>WENV181401149
OFSF01066059
[OFSF] wastewater metagenome; Exp Tend VB 100WW
298
224
-
His
GTG
[ENA]
¢þ
>WENV181732252
OGQD01019467
[OGQD] human gut metagenome; faeces
1385
1460
+
His
GTG
[ENA]
¢þ
>WENV170639176
JFJP01001282
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
10678
10603
-
His
GTG
[ENA]
¢þ
>WENV171003865
NNBV01002860
[NNBV] plant metagenome; symbiotic tissue sample KVS11
453
378
-
His
GTG
[ENA]
¢þ
>C181047480
CP020919
Bacteroidota
Flavobacterium kingsejongi WV39 [CP020919]
2747075
2747149
+
His
GTG
-
¡û
>C181175949
CP029187
Bacteroidota
Flavobacterium pallidum HYN0049 [CP029187]
2969131
2969055
-
His
GTG
-
¡û
>C191155217
CP037933
Bacteroidota
Flavobacterium nackdongense GS13 [CP037933]
448677
448751
+
His
GTG
-
¡û
>C191161907
CP038810
Bacteroidota
Flavobacterium sangjuense GS03 [CP038810]
2993549
2993475
-
His
GTG
-
¡û
>W141560698
JHXV01000017
Bacteroidota
Crocinitomix catalasitica ATCC 23190 [JHXV]
95924
95999
+
His
GTG
[ENA]
¡û
>W141726700
JNCA01000029
Bacteroidota
Flavobacterium seoulense EM1321 [JNCA]
38894
38969
+
His
GTG
[ENA]
¡û
>W1910183300
BJNP01000014
Bacteroidota
Flavobacterium flevense NBRC 14960 [BJNP]
79579
79505
-
His
GTG
[ENA]
¡û
>W1910545612
FZLT01000043
Bacteroidota
Cellulophaga lytica [FZLT]
73675
73750
+
His
GTG
[ENA]
¡û
>W1910547024
FZNL01000012
Bacteroidota
Flavobacterium sp. ov086 ov086 OV086 [FZNL]
43812
43886
+
His
GTG
[ENA]
¡û
>W1910728194
MGWJ01000161
Bacteroidota
Flavobacteria bacterium RIFCSPLOWO2_12_FULL_31_7 [MGWJ]
7117
7041
-
His
GTG
[ENA]
¡û
>W1910805339
MTQF01000004
Bacteroidota
[Flexibacter] sp. ATCC 35103 [MTQF]
341824
341750
-
His
GTG
[ENA]
¡û
>W1910808868
MUGR01000050
Bacteroidota
Flavobacterium aquidurense DSM 18293 [MUGR]
20758
20832
+
His
GTG
[ENA]
¡û
>W1910808869
MUGR01000050
Bacteroidota
Flavobacterium aquidurense DSM 18293 [MUGR]
21210
21284
+
His
GTG
[ENA]
¡û
>W1910809042
MUGV01000018
Bacteroidota
Flavobacterium frigidimaris DSM 15937 [MUGV]
936
862
-
His
GTG
[ENA]
¡û
>W1910809144
MUGX01000011
Bacteroidota
Flavobacterium hibernum ATCC 51468 [MUGX]
643390
643464
+
His
GTG
[ENA]
¡û
>W1911747598
QWDN01000003
Bacteroidota
Flavobacterium circumlabens CCM 8828 [QWDN]
232276
232350
+
His
GTG
[ENA]
¡û
>W1810071582
PEEU01000001
Bacteroidota
Flavobacterium sp. 9 [PEEU]
1420047
1419973
-
His
GTG
[ENA]
¡û
>W1810089352
PGER01000001
Bacteroidota
Flavobacterium sp. 1 [PGER]
2370501
2370427
-
His
GTG
[ENA]
¡û
>W1810121198
PHUE01000001
Bacteroidota
Flavobacterium sp. 5 [PHUE]
492956
492882
-
His
GTG
[ENA]
¡û
>W1810121582
PHUL01000001
Bacteroidota
Algibacter sp. RHA_19 [PHUL]
2611398
2611473
+
His
GTG
[ENA]
¡û
>W1810173560
PJND01000007
Bacteroidota
Flavobacterium lindanitolerans IP-10 [PJND]
2070528
2070603
+
His
GTG
[ENA]
¡û
>W1810265865
PQVG01000006
Bacteroidota
Flavobacterium alvei HR-AY [PQVG]
252117
252043
-
His
GTG
[ENA]
¡û
>W1810475392
QAIZ01000287
Bacteroidota
Flavobacterium sp. HMWF030 [QAIZ]
6316
6242
-
His
GTG
[ENA]
¡û
>W1810533276
QCZI01000001
Bacteroidota
Flavobacterium psychrotolerans RB1R5 [QCZI]
249838
249764
-
His
GTG
[ENA]
¡û
>W1810577028
QENX01000001
Bacteroidota
Flavobacterium sp. 103 [QENX]
505865
505791
-
His
GTG
[ENA]
¡û
>W1810596058
QGGJ01000005
Bacteroidota
Flavobacterium araucananum DSM 24704 [QGGJ]
25990
26064
+
His
GTG
[ENA]
¡û
>W1810672648
QJTO01000003
Bacteroidota
Flavobacterium sp. GV069 [QJTO]
285673
285747
+
His
GTG
[ENA]
¡û
>W1810676041
QKLS01000003
Bacteroidota
Flavobacterium sp. GV030 [QKLS]
285672
285746
+
His
GTG
[ENA]
¡û
>W1810680834
QKSB01000002
Bacteroidota
Putridiphycobacter roseus SM1701 [QKSB]
514359
514284
-
His
GTG
[ENA]
¡û
>W1810684396
QKXH01000003
Bacteroidota
Flavobacterium aquariorum IMCC34762 [QKXH]
31928
31854
-
His
GTG
[ENA]
¡û
>C151046352
CP009239
Bacteroidota
Cellulophaga lytica HI1 [CP009239]
3573516
3573441
-
His
GTG
[Ensembl]
¡û
>W1530027240
JYNQ01000001
Bacteroidota
Lacinutrix sp. Hel_I_90 Hel_I_90 Hel_I _90 [JYNQ]
149588
149513
-
His
GTG
[ENA]
¡û
>C11105683
CP002534
Bacteroidota
Cellulophaga lytica DSM 7489 [CP002534]
3593228
3593153
-
His
GTG
[Ensembl]
¡û
>W1511311969
JPRK01000003
Bacteroidota
Flavobacterium hibernum DSM 12611 [JPRK]
36928
36853
-
His
GTG
[ENA]
¡û
>W1511656848
LEKS01000002
Bacteroidota
Flavobacterium sp. ABG [LEKS]
331960
331885
-
His
GTG
[ENA]
¡û
>W1511656849
LEKS01000002
Bacteroidota
Flavobacterium sp. ABG [LEKS]
331319
331244
-
His
GTG
[ENA]
¡û
>C121017027
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
1382499
1382424
-
His
GTG
[Ensembl]
¡û
>WENV058794
AACY023341983
Marine microbial communities from Global Ocean Sampling (GOS)
1077
1155
+
His
GTG
[ENA]
>W1610534882
JRLF01000012
Bacteroidota
Flavobacterium aquidurense [JRLF]
459292
459367
+
His
GTG
[ENA]
¡û
>W1610734847
LMMA01000023
Bacteroidota
Flavobacterium sp. Leaf82 [LMMA]
424721
424646
-
His
GTG
[ENA]
¡û
>W1610739520
LMPW01000012
Bacteroidota
Flavobacterium sp. Leaf359 [LMPW]
763675
763750
+
His
GTG
[ENA]
¡û
>W1610949928
LVEN01000035
Bacteroidota
Flavobacterium piscis [LVEN]
237813
237738
-
His
GTG
[ENA]
¡û
>W1710531652
FNPS01000002
Bacteroidota
Flavobacterium aquidurense [FNPS]
247744
247669
-
His
GTG
[ENA]
¡û
>W1710542931
FNZN01000007
Bacteroidota
Maribacter orientalis [FNZN]
134548
134472
-
His
GTG
[ENA]
¡û
>W1710575149
FOYX01000003
Bacteroidota
Maribacter stanieri [FOYX]
566410
566486
+
His
GTG
[ENA]
¡û
>W1710579951
FPIY01000001
Bacteroidota
Cellulophaga fucicola [FPIY]
910139
910064
-
His
GTG
[ENA]
¡û
>W1710585075
FQWB01000006
Bacteroidota
Flavobacterium fluvii [FQWB]
91985
92060
+
His
GTG
[ENA]
¡û
>W1710585295
FQWG01000013
Bacteroidota
Flavobacterium frigidimaris [FQWG]
174385
174460
+
His
GTG
[ENA]
¡û
>W1710585296
FQWG01000013
Bacteroidota
Flavobacterium frigidimaris [FQWG]
174837
174912
+
His
GTG
[ENA]
¡û
>W1710591961
FRCC01000007
Bacteroidota
Flavobacterium flevense [FRCC]
84071
84146
+
His
GTG
[ENA]
¡û
>W1710637118
JRLF01000012
Bacteroidota
Flavobacterium aquidurense [JRLF]
459292
459367
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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