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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147087 (109 seq.)
>W1710797143
LJSU01000015
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
33304
33228
-
His
GTG
[ENA]
¡û
>W1710922267
LOAS01000013
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
191274
191198
-
His
GTG
[ENA]
¡û
>W1710996636
LQBP01000003
Alphaproteobacteria
Ruegeria profundi ZGT108 [LQBP]
169272
169348
+
His
GTG
[ENA]
¡û
>W1710996685
LQBQ01000012
Alphaproteobacteria
Ruegeria marisrubri ZGT118 [LQBQ]
352903
352979
+
His
GTG
[ENA]
¡û
>W1711357120
MDHA01000021
Alphaproteobacteria
Thioclava sp. SK-1 [MDHA]
247610
247534
-
His
GTG
[ENA]
¡û
>C171108690
CP020474
Alphaproteobacteria
Roseovarius mucosus SMR3 [CP020474]
1178307
1178231
-
His
GTG
-
¡û
>W131164655
ARAY01000015
Alphaproteobacteria
Wenxinia marina DSM 24838 [ARAY]
10472
10396
-
His
GTG
[ENA]
¡û
>W131155860
AQOX01000005
Alphaproteobacteria
Limimaricola hongkongensis DSM 17492 [AQOX]
186756
186832
+
His
GTG
[ENA]
¡û
>C023187
CP000031
Alphaproteobacteria
Ruegeria pomeroyi DSS-3 [CP000031]
1886364
1886440
+
His
GTG
[Ensembl]
¡û
>w027735
ABCL01000003
Alphaproteobacteria
Roseovarius sp. TM1035 [ABCL]
310690
310612
-
His
GTG
[ENA]
¡û
>w012868
AAMV01000005
Alphaproteobacteria
Roseovarius sp. 217 [AAMV]
13350
13272
-
His
GTG
[ENA]
¡û
>w012526
AAMO01000004
Alphaproteobacteria
Pseudooceanicola batsensis HTCC2597 [AAMO]
90209
90287
+
His
GTG
[ENA]
¡û
>WENV180115741
OAPT01028061
[OAPT] marine metagenome; seawater
226
302
+
His
GTG
[ENA]
¢þ
>WENV180294276
OBIY01058231
[OBIY] beach sand metagenome; beach sand
129
205
+
His
GTG
[ENA]
¢þ
>WENV181234079
OFET01002102
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
2129
2053
-
His
GTG
[ENA]
¢þ
>WENV181234137
OFET01008367
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
492
416
-
His
GTG
[ENA]
¢þ
>WENV181234470
OFEU01000187
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
24394
24318
-
His
GTG
[ENA]
¢þ
>WENV182549101
OJBX01019193
[OJBX] seawater metagenome; Sea water
262
186
-
His
GTG
[ENA]
¢þ
>WENV182591747
OJIO01003493
[OJIO] seawater metagenome; Sea water
1335
1259
-
His
GTG
[ENA]
¢þ
>WENV183704242
PDWI01000110
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
94765
94841
+
His
GTG
[ENA]
¢þ
>WENV183716586
PDWJ01000058
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
47074
46998
-
His
GTG
[ENA]
¢þ
>WENV183749120
PPFU01122172
[PPFU] hypolithon metagenome; Antarctic Hypolithon
4220
4144
-
His
GTG
[ENA]
¢þ
>WENV170229689
CEQG01148915
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
651
575
-
His
GTG
[ENA]
¢þ
>WENV170269081
CERH01038373
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
2234
2310
+
His
GTG
[ENA]
¢þ
>WENV170668258
LADL02002177
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
14201
14125
-
His
GTG
[ENA]
¢þ
>WENV170705284
LLEQ01003083
[LLEQ] bioreactor metagenome; day86 25degC chemostat 2012 inoculated with Wadden Sea sediment taken from the upper 2 cm of the
466
542
+
His
GTG
[ENA]
¢þ
>WENV170729430
LULF01035055
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
309
385
+
His
GTG
[ENA]
¢þ
>WENV170755938
LUMO01000741
[LUMO] marine metagenome; Red Sea water column Station 22 - depth 10m
3580
3504
-
His
GTG
[ENA]
¢þ
>WENV170756121
LUMO01006981
[LUMO] marine metagenome; Red Sea water column Station 22 - depth 10m
975
1051
+
His
GTG
[ENA]
¢þ
>WENV170759222
LUMS01006602
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
406
482
+
His
GTG
[ENA]
¢þ
>WENV170825952
MDSY01102566
[MDSY] marine metagenome; seawater
2839
2763
-
His
GTG
[ENA]
¢þ
>WENV170893784
MDTD01056385
[MDTD] marine metagenome; seawater
6040
5964
-
His
GTG
[ENA]
¢þ
>WENV170940208
MDTG01339480
[MDTG] marine metagenome; seawater
5268
5344
+
His
GTG
[ENA]
¢þ
>WENV170963630
MRWG01000402
[MRWG] biofilm metagenome; microbial consortium enriched at the cathode of a solar microbial fuel cell
21627
21703
+
His
GTG
[ENA]
¢þ
>C181158400
CP027665
Alphaproteobacteria
Pukyongiella litopenaei SH-1 [CP027665]
212430
212354
-
His
GTG
-
¡û
>C181188006
CP030099
Alphaproteobacteria
Roseovarius sp. AK1035 [CP030099]
104351
104275
-
His
GTG
-
¡û
>C191020042
CP022303
Alphaproteobacteria
Thalassococcus sp. S3 [CP022303]
2944112
2944036
-
His
GTG
-
¡û
>C191083108
CP031946
Alphaproteobacteria
Ruegeria sp. AD91A [CP031946]
1582062
1581986
-
His
GTG
-
¡û
>C191127879
CP034588
Alphaproteobacteria
Silicimonas algicola KC90 [CP034588]
1012567
1012491
-
His
GTG
-
¡û
>W141562451
JHZF01000011
Alphaproteobacteria
Pseudooceanicola nanhaiensis DSM 18065 [JHZF]
275282
275358
+
His
GTG
[ENA]
¡û
>W09118396
ACCW01000036
Alphaproteobacteria
Rhodobacteraceae bacterium KLH11 [ACCW]
304663
304739
+
His
GTG
[ENA]
¡û
>W09132611
ACNX01000045
Alphaproteobacteria
Ruegeria lacuscaerulensis ITI-1157 [ACNX]
172437
172361
-
His
GTG
[ENA]
¡û
>W141818711
JQLS01000008
Alphaproteobacteria
Roseovarius sp. MCTG156(2b) [JQLS]
588169
588245
+
His
GTG
[ENA]
¡û
>W1910443147
FWFV01000001
Alphaproteobacteria
Palleronia marisminoris CECT 7066 [FWFV]
317882
317806
-
His
GTG
[ENA]
¡û
>W1910443296
FWFY01000004
Alphaproteobacteria
Limimaricola soesokkakensis CECT 8367 [FWFY]
147820
147744
-
His
GTG
[ENA]
¡û
>W1910499803
FXYG01000001
Alphaproteobacteria
Ruegeria arenilitoris CECT 8715 [FXYG]
155329
155405
+
His
GTG
[ENA]
¡û
>W1910548989
FZOY01000002
Alphaproteobacteria
Tropicimonas sediminicola DSM 29339 [FZOY]
291178
291254
+
His
GTG
[ENA]
¡û
>W1911189721
NQWH01000023
Alphaproteobacteria
Limimaricola cinnabarinus XM1 [NQWH]
36583
36507
-
His
GTG
[ENA]
¡û
>W1911492689
OBEA01000007
Alphaproteobacteria
Pseudooceanicola antarcticus CGMCC 1.12662 [OBEA]
3313
3237
-
His
GTG
[ENA]
¡û
>W1911638532
PVWS01000013
Alphaproteobacteria
Roseovarius sp. A46 [PVWS]
84968
84892
-
His
GTG
[ENA]
¡û
>W1911653466
QDFI01000025
Alphaproteobacteria
Phycocomes zhengii LMIT002 [QDFI]
20674
20598
-
His
GTG
[ENA]
¡û
>W1911696555
QMEK01000001
Alphaproteobacteria
Tropicimonas sp. IMCC34043 [QMEK]
832446
832370
-
His
GTG
[ENA]
¡û
>W1911747132
QWDA01000001
Alphaproteobacteria
Paracoccaceae bacterium IMCC 34051 [QWDA]
209164
209240
+
His
GTG
[ENA]
¡û
>W1911813295
QZEX01000005
Alphaproteobacteria
Chachezhania antarctica SM1703 [QZEX]
334164
334088
-
His
GTG
[ENA]
¡û
>W1810061276
PDNI01000065
Alphaproteobacteria
Roseovarius nitratireducens TFZ [PDNI]
355040
354964
-
His
GTG
[ENA]
¡û
>W1810101660
PGTB01000087
Alphaproteobacteria
Pseudooceanicola lipolyticus 157 [PGTB]
9489
9565
+
His
GTG
[ENA]
¡û
>W1810101741
PGTD01000012
Alphaproteobacteria
Pseudooceanicola antarcticus Ar-45 [PGTD]
4421
4345
-
His
GTG
[ENA]
¡û
>W1810120326
PHSN01000002
Alphaproteobacteria
Acidimangrovimonas sediminis MS2-2 [PHSN]
59263
59339
+
His
GTG
[ENA]
¡û
>W1810364325
PVTD01000002
Alphaproteobacteria
Aliiruegeria haliotis DSM 29328 [PVTD]
180485
180561
+
His
GTG
[ENA]
¡û
>W1810400385
PYGB01000004
Alphaproteobacteria
Limimaricola soesokkakensis DSM 29956 [PYGB]
275858
275934
+
His
GTG
[ENA]
¡û
>W1810504500
QBKZ01000001
Alphaproteobacteria
Mangrovicoccus ximenensis T1lg56 [QBKZ]
233226
233302
+
His
GTG
[ENA]
¡û
>W1810570029
QEHM01000008
Alphaproteobacteria
Albibacillus kandeliae J95 [QEHM]
250478
250402
-
His
GTG
[ENA]
¡û
>W1810578026
QEOS01000006
Alphaproteobacteria
Phaeobacter sp. JL2872 JL2872 [QEOS]
82722
82646
-
His
GTG
[ENA]
¡û
>W1810596831
QGGV01000001
Alphaproteobacteria
Silicimonas algicola DSM 103371 [QGGV]
729796
729720
-
His
GTG
[ENA]
¡û
>W1810603206
QGKU01000002
Alphaproteobacteria
Meridianimarinicoccus roseus TG-679 [QGKU]
50075
50151
+
His
GTG
[ENA]
¡û
>W1810672082
QJTE01000001
Alphaproteobacteria
Pseudoroseicyclus aestuarii CECT 9025 [QJTE]
506983
507059
+
His
GTG
[ENA]
¡û
>W1810692300
QLIW01000008
Alphaproteobacteria
Rhodobacteraceae bacterium AsT-22 [QLIW]
43534
43610
+
His
GTG
[ENA]
¡û
>W1511482900
JWLJ01000001
Alphaproteobacteria
Ruegeria sp. ANG-R [JWLJ]
440422
440498
+
His
GTG
[ENA]
¡û
>W1511482948
JWLK01000001
Alphaproteobacteria
Ruegeria sp. ANG-S4 [JWLK]
1503987
1504063
+
His
GTG
[ENA]
¡û
>W1511564683
LADY01000020
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
96930
96854
-
His
GTG
[ENA]
¡û
>W1511564709
LADY01000064
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
231160
231236
+
His
GTG
[ENA]
¡û
>W11152726
AEYW01000013
Alphaproteobacteria
Ruegeria conchae TW15 [AEYW]
369074
369150
+
His
GTG
[ENA]
¡û
>W1511686494
LFTY01000001
Alphaproteobacteria
Candidatus Rhodobacter lobularis symbiont of Oscarella lobularis [LFTY]
730943
731019
+
His
GTG
[ENA]
¡û
>W11157615
AFCF01000011
Alphaproteobacteria
Leisingera sp. ANG1 ANG1 [AFCF]
94969
94893
-
His
GTG
[ENA]
¡û
>C161083471
CP015124
Alphaproteobacteria
Phaeobacter gallaeciensis JL2886 [CP015124]
3452454
3452530
+
His
GTG
-
¡û
>W1610014758
AONG01000018
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
10476
10400
-
His
GTG
[ENA]
¡û
>W1610014781
AONH01000010
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
295720
295796
+
His
GTG
[ENA]
¡û
>W1610094951
CYUD01000003
Alphaproteobacteria
Ruegeria denitrificans CECT 5091 [CYUD]
121746
121822
+
His
GTG
[ENA]
¡û
>WENV071087
AACY023834730
Marine microbial communities from Global Ocean Sampling (GOS)
262
340
+
His
GTG
[ENA]
>W1610661100
LJSU01000015
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO07 [LJSU]
33304
33228
-
His
GTG
[ENA]
¡û
>W1610779746
LOAS01000013
Alphaproteobacteria
Aliiruegeria sabulilitoris [LOAS]
191274
191198
-
His
GTG
[ENA]
¡û
>W1610851293
LQBP01000003
Alphaproteobacteria
Ruegeria profundi ZGT108 [LQBP]
169272
169348
+
His
GTG
[ENA]
¡û
>W1610851342
LQBQ01000012
Alphaproteobacteria
Ruegeria marisrubri ZGT118 [LQBQ]
352903
352979
+
His
GTG
[ENA]
¡û
>W1710011649
AONG01000018
Alphaproteobacteria
Wenxinia marina DSM 24838 [AONG]
10476
10400
-
His
GTG
[ENA]
¡û
>W1710011672
AONH01000010
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
295720
295796
+
His
GTG
[ENA]
¡û
>W1710015366
AQQP01000012
Alphaproteobacteria
Phaeobacter sp. 22II1-1F12B [AQQP]
154191
154115
-
His
GTG
[ENA]
¡û
>W1710015578
AQQU01000004
Alphaproteobacteria
Oceanicola sp. 22II-s10i [AQQU]
162611
162687
+
His
GTG
[ENA]
¡û
>W1710083040
BDIY01000003
Alphaproteobacteria
Roseovarius sp. A-2 [BDIY]
232560
232636
+
His
GTG
[ENA]
¡û
>W1710513001
FMZV01000004
Alphaproteobacteria
Ruegeria marina [FMZV]
235009
234933
-
His
GTG
[ENA]
¡û
>W1710514185
FNAT01000002
Alphaproteobacteria
Limimaricola pyoseonensis [FNAT]
365746
365822
+
His
GTG
[ENA]
¡û
>W1710514436
FNAY01000001
Alphaproteobacteria
Rhodobacter capsulatus [FNAY]
207331
207407
+
His
GTG
[ENA]
¡û
>W1710518504
FNEB01000003
Alphaproteobacteria
Lutimaribacter saemankumensis [FNEB]
223488
223564
+
His
GTG
[ENA]
¡û
>W1710519030
FNEK01000160
Alphaproteobacteria
Aliiruegeria lutimaris [FNEK]
174
98
-
His
GTG
[ENA]
¡û
>W1710524239
FNIO01000005
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
253165
253241
+
His
GTG
[ENA]
¡û
>W1710538992
FNUZ01000001
Alphaproteobacteria
Thalassococcus halodurans [FNUZ]
379338
379262
-
His
GTG
[ENA]
¡û
>W1710541205
FNYD01000005
Alphaproteobacteria
Cribrihabitans marinus [FNYD]
259729
259653
-
His
GTG
[ENA]
¡û
>W1710542601
FNZG01000004
Alphaproteobacteria
Pseudooceanicola nitratireducens [FNZG]
363752
363676
-
His
GTG
[ENA]
¡û
>W1710543728
FOAG01000003
Alphaproteobacteria
Roseovarius azorensis [FOAG]
338493
338417
-
His
GTG
[ENA]
¡û
>W1710545536
FOBO01000010
Alphaproteobacteria
Roseovarius tolerans [FOBO]
113853
113929
+
His
GTG
[ENA]
¡û
>W1710548356
FODS01000007
Alphaproteobacteria
Salinihabitans flavidus [FODS]
151172
151248
+
His
GTG
[ENA]
¡û
>W1710557729
FOLG01000008
Alphaproteobacteria
Tropicimonas isoalkanivorans [FOLG]
128575
128651
+
His
GTG
[ENA]
¡û
>W1710558472
FOLX01000001
Alphaproteobacteria
Pseudooceanicola nitratireducens [FOLX]
2201881
2201805
-
His
GTG
[ENA]
¡û
>W1710562802
FOPF01000001
Alphaproteobacteria
Palleronia marisminoris [FOPF]
318070
317994
-
His
GTG
[ENA]
¡û
>W1710574563
FOYI01000006
Alphaproteobacteria
Poseidonocella sedimentorum [FOYI]
80590
80666
+
His
GTG
[ENA]
¡û
>W1710584247
FQVK01000022
Alphaproteobacteria
Ruegeria intermedia [FQVK]
61786
61862
+
His
GTG
[ENA]
¡û
>W1710587276
FQYJ01000001
Alphaproteobacteria
Ruegeria lacuscaerulensis ITI-1157 [FQYJ]
545367
545443
+
His
GTG
[ENA]
¡û
>W1710589244
FQZZ01000003
Alphaproteobacteria
Lutimaribacter pacificus [FQZZ]
287736
287660
-
His
GTG
[ENA]
¡û
>W1710594754
FSRL01000001
Alphaproteobacteria
Vannielia litorea litoreus [FSRL]
746139
746215
+
His
GTG
[ENA]
¡û
>W1710609084
FXBQ01000001
Alphaproteobacteria
Maritimibacter sp. HL-12 [FXBQ]
2962420
2962496
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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