This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147089 (5 seq.)
>WENV183701638
PDVH01000051
[PDVH] alkali sediment metagenome; glacial lake sediment
29925
29848
-
Asp
GTC
[ENA]
¡û
>WENV183703134
PDVJ01003594
[PDVJ] alkali sediment metagenome; glacial lake sediment
1777
1700
-
Asp
GTC
[ENA]
¡û
>WENV170672053
LAHU01286755
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
94
171
+
Asp
GTC
[ENA]
¡û
>WENV170971125
MTKX01001860
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
31800
31723
-
Asp
GTC
[ENA]
¡û
>WENV170977482
MTKZ01024668
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
8323
8400
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK