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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147114 (10 seq.)
>WENV180028989
FTJI01001228
[FTJI] metagenome; soil
503
428
-
Pro
GGG
[ENA]
¡û
>WENV180034513
FTKR01001221
[FTKR] metagenome; soil
503
428
-
Pro
GGG
[ENA]
¡û
>WENV180242574
OBDI01301536
[OBDI] metagenome; diffuse fluid
84
159
+
Pro
GGG
[ENA]
¡û
>WENV180291820
OBIV01188968
[OBIV] soil metagenome; Clay
96
171
+
Pro
GGG
[ENA]
¡û
>WENV180583874
OCNB01259693
[OCNB] metagenome; diffuse fluid
177
102
-
Pro
GGG
[ENA]
¡û
>WENV183514072
OMKS01011579
[OMKS] sediment metagenome; hot spring sediment
2941
3016
+
Pro
GGG
[ENA]
¡û
>WENV170551647
CXWJ01016066
[CXWJ] wastewater metagenome; activated sludge
3114
3191
+
Pro
GGG
[ENA]
¡û
>WENV170649585
JRYC01029460
[JRYC] activated sludge metagenome; activated biomass of a common effluent treatment plant treating industrial wastewater
405
480
+
Pro
GGG
[ENA]
¡û
>WENV170979263
MTKZ01082975
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1208
1282
+
Pro
GGG
[ENA]
¡û
>WENV170979278
MTKZ01083612
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
2102
2026
-
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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