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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147267 (37 seq.)
>W131037626
AMFF01000517
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMFF]
1981
1905
-
Pro
TGG
[ENA]
¡û
>W131038495
AMGC01000439
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
2102
2026
-
Pro
TGG
[ENA]
¡û
>W1711138244
LVCQ01000013
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
1546
1470
-
Pro
TGG
[ENA]
¡û
>W131195176
ASSK01000112
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
6011
6087
+
Pro
TGG
[ENA]
¡û
>W1711372810
MDTU01000001
Gammaproteobacteria
Piscirickettsia litoralis Y2 [MDTU]
1760418
1760342
-
Pro
TGG
[ENA]
¡û
>C171026474
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
1208237
1208313
+
Pro
TGG
-
¡û
>C171026530
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
1338870
1338946
+
Pro
TGG
-
¡û
>C171026605
CP013768
Gammaproteobacteria
Piscirickettsia salmonis PM23019A [CP013768]
2030354
2030278
-
Pro
TGG
-
¡û
>C171026660
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
2027475
2027399
-
Pro
TGG
-
¡û
>C171026719
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
1891317
1891241
-
Pro
TGG
-
¡û
>C171026775
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
1890638
1890562
-
Pro
TGG
-
¡û
>C171026831
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
1890909
1890833
-
Pro
TGG
-
¡û
>C171026884
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
2546260
2546184
-
Pro
TGG
-
¡û
>C171026918
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
835765
835841
+
Pro
TGG
-
¡û
>C171026993
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
3097458
3097382
-
Pro
TGG
-
¡û
>C171027055
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
1890718
1890642
-
Pro
TGG
-
¡û
>C171027108
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
2546266
2546190
-
Pro
TGG
-
¡û
>C171027164
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
2546265
2546189
-
Pro
TGG
-
¡û
>C171027217
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
3098728
3098652
-
Pro
TGG
-
¡û
>WENV180586429
OCOM01080418
[OCOM] marine metagenome; seawater
404
328
-
Pro
TGG
[ENA]
¢þ
>W141221188
AZYQ02000040
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
2652
2576
-
Pro
TGG
[ENA]
¡û
>WENV170768498
LXNH01021350
[LXNH] seawater metagenome; marine seawater
1616
1540
-
Pro
TGG
[ENA]
¢þ
>WENV170924769
MDTG01071345
[MDTG] marine metagenome; seawater
999
923
-
Pro
TGG
[ENA]
¢þ
>C191116636
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
3099056
3098980
-
Pro
TGG
-
¡û
>W1911652734
QBEV01000047
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
1872
1796
-
Pro
TGG
[ENA]
¡û
>W1810054394
PDFD01000191
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
1935
1859
-
Pro
TGG
[ENA]
¡û
>C151086950
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
89347
89423
+
Pro
TGG
[Ensembl]
¡û
>C151095303
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
3097456
3097380
-
Pro
TGG
-
¡û
>W1511336325
JRAD02000050
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
2652
2576
-
Pro
TGG
[ENA]
¡û
>W1511337051
JRAV02000044
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
2297
2221
-
Pro
TGG
[ENA]
¡û
>W1511346433
JRHD01000173
Gammaproteobacteria
Piscirickettsia salmonis T-GIM [JRHD]
6376
6300
-
Pro
TGG
[ENA]
¡û
>W1511346888
JRHP01000213
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
2003
1927
-
Pro
TGG
[ENA]
¡û
>W1511657136
LELB01000032
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [LELB]
2235
2159
-
Pro
TGG
[ENA]
¡û
>C161042007
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
77019
77095
+
Pro
TGG
[Ensembl]
¡û
>C161062478
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
3078668
3078592
-
Pro
TGG
-
¡û
>C161063145
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
3117212
3117136
-
Pro
TGG
-
¡û
>W1610949330
LVCQ01000013
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO1 NZ-RLO [LVCQ]
1546
1470
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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