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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147387 (124 seq.)
>W131205781
ATFC01000001
Spirochaetota
Treponema vincentii F0403 [ATFC]
55762
55687
-
Met
CAT
[ENA]
¡û
>W131205906
ATFE01000012
Spirochaetota
Treponema medium ATCC 700293 [ATFE]
179353
179278
-
Met
CAT
[ENA]
¡û
>W131000375
AGEB01000019
Spirochaetota
Treponema denticola US-Trep [AGEB]
2261
2335
+
Met
CAT
[ENA]
¡û
>W131003049
AHAB01000005
Spirochaetota
Treponema denticola SP23 [AHAB]
53819
53893
+
Met
CAT
[ENA]
¡û
>W131003074
AHAC01000009
Spirochaetota
Treponema denticola SP32 [AHAC]
370291
370365
+
Met
CAT
[ENA]
¡û
>W131003133
AHAD01000006
Spirochaetota
Treponema denticola SP44 [AHAD]
34991
34917
-
Met
CAT
[ENA]
¡û
>C025483
AE017226
Spirochaetota
Treponema denticola ATCC 35405 [AE017226]
2354124
2354197
+
Met
CAT
[Ensembl]
¡û
>C025756
AE000520
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [AE000520]
760094
760021
-
Met
CAT
[Ensembl]
¡û
>W141005349
AGDQ01000010
Spirochaetota
Treponema denticola AL-2 [AGDQ]
267621
267547
-
Met
CAT
[ENA]
¡û
>W141005364
AGDR01000010
Spirochaetota
Treponema denticola ASLM [AGDR]
2100
2174
+
Met
CAT
[ENA]
¡û
>W141005419
AGDS01000009
Spirochaetota
Treponema denticola ATCC 33520 [AGDS]
75846
75772
-
Met
CAT
[ENA]
¡û
>W141005459
AGDT01000006
Spirochaetota
Treponema denticola ATCC 33521 [AGDT]
300761
300687
-
Met
CAT
[ENA]
¡û
>W141005504
AGDU01000014
Spirochaetota
Treponema denticola ATCC 35404 [AGDU]
4928
5002
+
Met
CAT
[ENA]
¡û
>W141005547
AGDV01000009
Spirochaetota
Treponema denticola H-22 [AGDV]
154338
154412
+
Met
CAT
[ENA]
¡û
>W141005592
AGDW01000014
Spirochaetota
Treponema denticola H1-T [AGDW]
143533
143459
-
Met
CAT
[ENA]
¡û
>W141005637
AGDX01000006
Spirochaetota
Treponema denticola MYR-T [AGDX]
143407
143333
-
Met
CAT
[ENA]
¡û
>W141005671
AGDY01000004
Spirochaetota
Treponema denticola OTK [AGDY]
338082
338156
+
Met
CAT
[ENA]
¡û
>W141005718
AGDZ01000021
Spirochaetota
Treponema denticola SP33 [AGDZ]
42794
42720
-
Met
CAT
[ENA]
¡û
>W141005746
AGEA01000002
Spirochaetota
Treponema denticola SP37 [AGEA]
301599
301673
+
Met
CAT
[ENA]
¡û
>W141055918
AOTM01000166
Spirochaetota
Treponema pedis str. T M1 [AOTM]
1047
974
-
Met
CAT
[ENA]
¡û
>W141055931
AOTN01000076
Spirochaetota
Treponema pedis str. B 683 [AOTN]
6401
6474
+
Met
CAT
[ENA]
¡û
>W141055982
AOTO01000213
Spirochaetota
Treponema pedis isoM1111 [AOTO]
6758
6831
+
Met
CAT
[ENA]
¡û
>W141056027
AOTP01000088
Spirochaetota
Treponema pedis isoE1186 [AOTP]
2973
3046
+
Met
CAT
[ENA]
¡û
>W141056083
AOTQ01000183
Spirochaetota
Treponema pedis isoM1220 [AOTQ]
3880
3807
-
Met
CAT
[ENA]
¡û
>W141056103
AOTR01000011
Spirochaetota
Treponema pedis isoM1224 [AOTR]
1303
1230
-
Met
CAT
[ENA]
¡û
>W141064696
AQCF01000036
Spirochaetota
Treponema phagedenis 4A [AQCF]
120713
120788
+
Met
CAT
[ENA]
¡û
>WENV180708905
ODFJ01011847
[ODFJ] human metagenome; G_DNA_Tongue dorsum
85
10
-
Ile2
CAT
[ENA]
¢þ
>WENV180721815
ODGL01015315
[ODGL] human metagenome; G_DNA_Subgingival plaque
437
362
-
Ile2
CAT
[ENA]
¢þ
>WENV180727340
ODGU01004439
[ODGU] human metagenome; G_DNA_Supragingival plaque
7473
7546
+
Ile2
CAT
[ENA]
¢þ
>WENV180728371
ODGU01043953
[ODGU] human metagenome; G_DNA_Supragingival plaque
3
78
+
Ile2
CAT
[ENA]
¢þ
>WENV180734384
ODGZ01007531
[ODGZ] human metagenome; G_DNA_Supragingival plaque
361
435
+
Ile2
CAT
[ENA]
¢þ
>WENV180750067
ODHS01000359
[ODHS] human metagenome; G_DNA_Supragingival plaque
76
1
-
Ile2
CAT
[ENA]
¢þ
>WENV180768563
ODIG01010286
[ODIG] human metagenome; G_DNA_Tongue dorsum
1
74
+
Ile2
CAT
[ENA]
¢þ
>WENV180789179
ODIS01302123
[ODIS] human metagenome; G_DNA_Supragingival plaque
1
74
+
Ile2
CAT
[ENA]
¢þ
>WENV180797959
ODJB01181569
[ODJB] human metagenome; G_DNA_Supragingival plaque
333
406
+
Ile2
CAT
[ENA]
¢þ
>WENV180809332
ODJK01012346
[ODJK] human metagenome; G_DNA_Subgingival plaque
1162
1089
-
Ile2
CAT
[ENA]
¢þ
>WENV180810509
ODJK01352630
[ODJK] human metagenome; G_DNA_Subgingival plaque
78
5
-
Ile2
CAT
[ENA]
¢þ
>WENV180844248
ODKN01062561
[ODKN] human metagenome; G_DNA_Supragingival plaque
542
617
+
Ile2
CAT
[ENA]
¢þ
>WENV180846700
ODKT01019420
[ODKT] human metagenome; G_DNA_Supragingival plaque
1684
1759
+
Ile2
CAT
[ENA]
¢þ
>WENV180862450
ODLE01134682
[ODLE] human metagenome; G_DNA_Tongue dorsum
248
175
-
Ile2
CAT
[ENA]
¢þ
>WENV180882831
ODMC01000642
[ODMC] human metagenome; G_DNA_Tongue dorsum
15319
15244
-
Ile2
CAT
[ENA]
¢þ
>WENV180889747
ODMN01126139
[ODMN] human metagenome; G_DNA_Supragingival plaque
246
173
-
Ile2
CAT
[ENA]
¢þ
>WENV180924948
ODTK01026429
[ODTK] human metagenome; G_DNA_Supragingival plaque
1045
1120
+
Ile2
CAT
[ENA]
¢þ
>WENV180930814
ODTP01000426
[ODTP] human metagenome; G_DNA_Tongue dorsum
13911
13836
-
Ile2
CAT
[ENA]
¢þ
>WENV180931001
ODTP01000991
[ODTP] human metagenome; G_DNA_Tongue dorsum
13900
13827
-
Ile2
CAT
[ENA]
¢þ
>WENV180937917
ODTX01000196
[ODTX] human metagenome; G_DNA_Supragingival plaque
48904
48979
+
Ile2
CAT
[ENA]
¢þ
>WENV180944901
ODUC01045983
[ODUC] human metagenome; G_DNA_Supragingival plaque
857
782
-
Ile2
CAT
[ENA]
¢þ
>WENV180950066
ODUG01072251
[ODUG] human metagenome; G_DNA_Tongue dorsum
123
198
+
Ile2
CAT
[ENA]
¢þ
>WENV180950994
ODUH01005608
[ODUH] human metagenome; G_DNA_Subgingival plaque
2436
2361
-
Ile2
CAT
[ENA]
¢þ
>WENV180968827
ODUT01086954
[ODUT] human metagenome; G_DNA_Tongue dorsum
150
223
+
Ile2
CAT
[ENA]
¢þ
>WENV180976139
ODUY01049074
[ODUY] human metagenome; G_DNA_Supragingival plaque
564
489
-
Ile2
CAT
[ENA]
¢þ
>WENV180980296
ODVE01000025
[ODVE] human metagenome; G_DNA_Supragingival plaque
12349
12275
-
Ile2
CAT
[ENA]
¢þ
>WENV180980491
ODVE01000270
[ODVE] human metagenome; G_DNA_Supragingival plaque
21747
21820
+
Ile2
CAT
[ENA]
¢þ
>WENV180980857
ODVE01002737
[ODVE] human metagenome; G_DNA_Supragingival plaque
1754
1681
-
Ile2
CAT
[ENA]
¢þ
>WENV181008956
ODWE01020808
[ODWE] human metagenome; G_DNA_Supragingival plaque
366
439
+
Ile2
CAT
[ENA]
¢þ
>WENV181039517
ODXQ01026281
[ODXQ] human metagenome; G_DNA_Tongue dorsum
1503
1430
-
Ile2
CAT
[ENA]
¢þ
>WENV181043700
ODXV01000459
[ODXV] human metagenome; G_DNA_Tongue dorsum
19475
19402
-
Ile2
CAT
[ENA]
¢þ
>WENV181050667
ODYD01039754
[ODYD] human metagenome; G_DNA_Supragingival plaque
496
569
+
Ile2
CAT
[ENA]
¢þ
>WENV181069550
ODZZ01086760
[ODZZ] human metagenome; G_DNA_Tongue dorsum
153
80
-
Ile2
CAT
[ENA]
¢þ
>WENV181073624
OEAO01000654
[OEAO] human metagenome; G_DNA_Tongue dorsum
2450
2375
-
Ile2
CAT
[ENA]
¢þ
>WENV181076285
OEAP01003283
[OEAP] human metagenome; G_DNA_Supragingival plaque
7328
7253
-
Ile2
CAT
[ENA]
¢þ
>WENV181078749
OEAS01000445
[OEAS] human metagenome; G_DNA_Supragingival plaque
25797
25870
+
Ile2
CAT
[ENA]
¢þ
>WENV181078792
OEAS01000541
[OEAS] human metagenome; G_DNA_Supragingival plaque
9637
9712
+
Ile2
CAT
[ENA]
¢þ
>WENV181079821
OEAS01016109
[OEAS] human metagenome; G_DNA_Supragingival plaque
851
926
+
Ile2
CAT
[ENA]
¢þ
>WENV181080096
OEAS01026398
[OEAS] human metagenome; G_DNA_Supragingival plaque
2315
2242
-
Ile2
CAT
[ENA]
¢þ
>WENV181080378
OEAS01043970
[OEAS] human metagenome; G_DNA_Supragingival plaque
673
599
-
Ile2
CAT
[ENA]
¢þ
>WENV181080668
OEAS01066646
[OEAS] human metagenome; G_DNA_Supragingival plaque
1077
1150
+
Ile2
CAT
[ENA]
¢þ
>WENV181080949
OEAS01105597
[OEAS] human metagenome; G_DNA_Supragingival plaque
80
7
-
Ile2
CAT
[ENA]
¢þ
>WENV181084283
OEAV01126360
[OEAV] human metagenome; G_DNA_Supragingival plaque
205
132
-
Ile2
CAT
[ENA]
¢þ
>WENV181090914
OEBC01006247
[OEBC] human metagenome; G_DNA_Supragingival plaque
1945
1870
-
Ile2
CAT
[ENA]
¢þ
>WENV181094958
OEBY01002102
[OEBY] human metagenome; G_DNA_Tongue dorsum
6294
6367
+
Ile2
CAT
[ENA]
¢þ
>WENV181095096
OEBY01003095
[OEBY] human metagenome; G_DNA_Tongue dorsum
6828
6903
+
Ile2
CAT
[ENA]
¢þ
>WENV181103390
OECT01107133
[OECT] human metagenome; G_DNA_Tongue dorsum
8
83
+
Ile2
CAT
[ENA]
¢þ
>WENV181105189
OEED01001582
[OEED] human metagenome; G_DNA_Tongue dorsum
661
586
-
Ile2
CAT
[ENA]
¢þ
>WENV181139309
OEGN01005746
[OEGN] human metagenome; G_DNA_Tongue dorsum
4384
4459
+
Ile2
CAT
[ENA]
¢þ
>WENV181146960
OEHQ01050676
[OEHQ] human metagenome; G_DNA_Supragingival plaque
551
478
-
Ile2
CAT
[ENA]
¢þ
>WENV181151794
OEHW01142337
[OEHW] human metagenome; G_DNA_Tongue dorsum
187
114
-
Ile2
CAT
[ENA]
¢þ
>WENV181152720
OEIA01004765
[OEIA] human metagenome; G_DNA_Supragingival plaque
3393
3466
+
Ile2
CAT
[ENA]
¢þ
>WENV181178699
OEJT01000158
[OEJT] human metagenome; G_DNA_Supragingival plaque
51668
51743
+
Ile2
CAT
[ENA]
¢þ
>WENV181182413
OEJV01008718
[OEJV] human metagenome; G_DNA_Supragingival plaque
1565
1492
-
Ile2
CAT
[ENA]
¢þ
>WENV183508005
OMHA01001398
[OMHA] human oral metagenome; human oral
402
328
-
Ile2
CAT
[ENA]
¢þ
>WENV183510950
OMHT01005058
[OMHT] human oral metagenome; human oral
549
475
-
Ile2
CAT
[ENA]
¢þ
>WENV183511029
OMHV01001965
[OMHV] human oral metagenome; human oral
572
498
-
Ile2
CAT
[ENA]
¢þ
>WENV183705233
PDWI01001250
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
32489
32416
-
Ile2
CAT
[ENA]
¢þ
>WENV183709779
PDWI01033865
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
181
254
+
Ile2
CAT
[ENA]
¢þ
>WENV183710423
PDWI01046388
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
3543
3616
+
Ile2
CAT
[ENA]
¢þ
>WENV183713383
PDWI01136215
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1637
1712
+
Ile2
CAT
[ENA]
¢þ
>WENV183714248
PDWI01175134
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1341
1416
+
Ile2
CAT
[ENA]
¢þ
>WENV183718997
PDWJ01008588
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
7245
7318
+
Ile2
CAT
[ENA]
¢þ
>WENV183720455
PDWJ01034508
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
7
82
+
Ile2
CAT
[ENA]
¢þ
>WENV183721002
PDWJ01051786
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
93
18
-
Ile2
CAT
[ENA]
¢þ
>WENV183722319
PDWJ01119596
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
9
84
+
Ile2
CAT
[ENA]
¢þ
>C191179255
CP040555
Spirochaetota
Treponema pallidum subsp. pallidum X-4 [CP040555]
761874
761801
-
Met
CAT
-
¡û
>C141003687
CP004120
Spirochaetota
Treponema pedis str. T A4 [CP004120]
1331388
1331315
-
Met
CAT
[Ensembl]
¡û
>C151004504
CP003679
Spirochaetota
Treponema pallidum subsp. pallidum str. Sea 81-4 [CP003679]
761266
761193
-
Met
CAT
[Ensembl]
¡û
>C151045972
CP009227
Spirochaetota
Treponema sp. OMZ 838 [CP009227]
45723
45798
+
Met
CAT
[Ensembl]
¡û
>C151046021
CP009228
Spirochaetota
Treponema putidum OMZ 758 [CP009228]
399008
399082
+
Met
CAT
[Ensembl]
¡û
>W10106174
ACYH01000048
Spirochaetota
Treponema vincentii ATCC 35580 [ACYH]
3445
3520
+
Met
CAT
[ENA]
¡û
>W1510074564
CDNC01000050
Spirochaetota
Treponema phagedenis V1 [CDNC]
94096
94171
+
Met
CAT
[ENA]
¡û
>C10113605
CP001752
Spirochaetota
Treponema pallidum subsp. pallidum str. Chicago [CP001752]
761343
761270
-
Met
CAT
[Ensembl]
¡û
>C10113649
CP000805
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP000805]
761542
761469
-
Met
CAT
[Ensembl]
¡û
>W11108497
ACYH01000048
Spirochaetota
Treponema vincentii ATCC 35580 [ACYH]
3445
3520
+
Met
CAT
[ENA]
¡û
>W11115136
ADEC01000012
Spirochaetota
Treponema denticola F0402 [ADEC]
461187
461113
-
Met
CAT
[ENA]
¡û
>C11122915
CP002103
Spirochaetota
Treponema paraluiscuniculi Cuniculi A [CP002103]
754958
754885
-
Met
CAT
[Ensembl]
¡û
>W11135641
AEFH01000008
Spirochaetota
Treponema phagedenis F0421 [AEFH]
13163
13088
-
Met
CAT
[ENA]
¡û
>C121002423
CP002374
Spirochaetota
Treponema pallidum subsp. pertenue str. SamoaD [CP002374]
761677
761604
-
Met
CAT
[Ensembl]
¡û
>C121002468
CP002375
Spirochaetota
Treponema pallidum subsp. pertenue str. CDC2 [CP002375]
762131
762058
-
Met
CAT
[Ensembl]
¡û
>C121002513
CP002376
Spirochaetota
Treponema pallidum subsp. pertenue str. Gauthier [CP002376]
761864
761791
-
Met
CAT
[Ensembl]
¡û
>C121006118
CP003115
Spirochaetota
Treponema pallidum subsp. pallidum DAL-1 [CP003115]
762031
761958
-
Met
CAT
[Ensembl]
¡û
>C161017276
CP007548
Spirochaetota
Treponema pallidum subsp. endemicum str. Bosnia A [CP007548]
759670
759597
-
Met
CAT
[Ensembl]
¡û
>C161028041
CP010558
Spirochaetota
Treponema pallidum subsp. pallidum Chicago Population [CP010558]
761570
761497
-
Met
CAT
-
¡û
>C161028085
CP010559
Spirochaetota
Treponema pallidum subsp. pallidum CDC-A [CP010559]
761733
761660
-
Met
CAT
-
¡û
>C161028129
CP010560
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010560]
760485
760412
-
Met
CAT
-
¡û
>C161028173
CP010561
Spirochaetota
Treponema pallidum subsp. pallidum Nichols Houston [CP010561]
761746
761673
-
Met
CAT
-
¡û
>C161028217
CP010562
Spirochaetota
Treponema pallidum subsp. pallidum UW074B [CP010562]
761603
761530
-
Met
CAT
-
¡û
>C161028261
CP010563
Spirochaetota
Treponema pallidum subsp. pallidum UW189B [CP010563]
761828
761755
-
Met
CAT
-
¡û
>C161028306
CP010564
Spirochaetota
Treponema pallidum subsp. pallidum UW228B [CP010564]
762065
761992
-
Met
CAT
-
¡û
>C161028350
CP010565
Spirochaetota
Treponema pallidum subsp. pallidum UW254B [CP010565]
761869
761796
-
Met
CAT
-
¡û
>C161028394
CP010566
Spirochaetota
Treponema pallidum subsp. pallidum UW391B [CP010566]
761808
761735
-
Met
CAT
-
¡û
>C161084207
CP015162
Spirochaetota
Treponema pallidum subsp. pallidum Amoy [CP015162]
625283
625210
-
Met
CAT
-
¡û
>C131001880
CP003064
Spirochaetota
Treponema pallidum subsp. pallidum str. Mexico A [CP003064]
762067
761994
-
Met
CAT
[Ensembl]
¡û
>C131009511
CP003902
Spirochaetota
Treponema pallidum str. Fribourg-Blanc [CP003902]
762397
762324
-
Met
CAT
[Ensembl]
¡û
>C131011372
CP004010
Spirochaetota
Treponema pallidum subsp. pallidum str. Nichols [CP004010]
761693
761620
-
Met
CAT
-
¡û
>C131011416
CP004011
Spirochaetota
Treponema pallidum subsp. pallidum SS14 [CP004011]
761573
761500
-
Met
CAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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