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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147780 (37 seq.)
>A171000277
CP000867
Euryarchaeota
Methanococcus maripaludis [CP000867]
786263
786190
-
Thr
TGT
-
¡û
>A171001540
CP002057
Euryarchaeota
Methanococcus voltae [CP002057]
1633297
1633370
+
Thr
TGT
-
¡û
>A171002346
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
594700
594627
-
Thr
TGT
-
¡û
>A171002488
CP002913
Euryarchaeota
Methanococcus maripaludis X1 [CP002913]
107675
107748
+
Thr
TGT
-
¡û
>WENV180274893
OBHO01002889
[OBHO] metagenome; water
53
126
+
Thr
TGT
[ENA]
¢þ
>WENV180287229
OBIK01003939
[OBIK] hydrothermal vent metagenome; sea water
266
193
-
Thr
TGT
[ENA]
¢þ
>WENV180316854
OBKJ01000199
[OBKJ] metagenome; hydrothermal vent
344
271
-
Thr
TGT
[ENA]
¢þ
>WENV180316915
OBKJ01001773
[OBKJ] metagenome; hydrothermal vent
144
217
+
Thr
TGT
[ENA]
¢þ
>WENV180332388
OBLD01002259
[OBLD] metagenome; water
341
268
-
Thr
TGT
[ENA]
¢þ
>WENV180332783
OBLD01138537
[OBLD] metagenome; water
179
106
-
Thr
TGT
[ENA]
¢þ
>WENV180581527
OCMK01002959
[OCMK] metagenome; diffuse fluid
22
95
+
Thr
TGT
[ENA]
¢þ
>WENV180582170
OCMO01006265
[OCMO] metagenome; diffuse fluid
344
271
-
Thr
TGT
[ENA]
¢þ
>WENV181206166
OFAT01000056
[OFAT] metagenome; hydrothermal vent
11750
11677
-
Thr
TGT
[ENA]
¢þ
>WENV181206588
OFAW01000375
[OFAW] metagenome; hydrothermal vent
5738
5811
+
Thr
TGT
[ENA]
¢þ
>WENV181207086
OFAY01000447
[OFAY] metagenome; hydrothermal vent
5158
5231
+
Thr
TGT
[ENA]
¢þ
>WENV181207445
OFAZ01000395
[OFAZ] metagenome; hydrothermal vent
5637
5710
+
Thr
TGT
[ENA]
¢þ
>WENV181207853
OFBA01001014
[OFBA] metagenome; hydrothermal vent
3347
3420
+
Thr
TGT
[ENA]
¢þ
>WENV181208252
OFBB01001491
[OFBB] metagenome; hydrothermal vent
435
362
-
Thr
TGT
[ENA]
¢þ
>WENV181208625
OFBC01000361
[OFBC] metagenome; hydrothermal vent
6080
6153
+
Thr
TGT
[ENA]
¢þ
>WENV181223781
OFDD01000264
[OFDD] metagenome; hydrothermal vent
7165
7238
+
Thr
TGT
[ENA]
¢þ
>WENV181224144
OFDE01000088
[OFDE] metagenome; hydrothermal vent
7506
7579
+
Thr
TGT
[ENA]
¢þ
>WENV181224422
OFDF01000794
[OFDF] metagenome; hydrothermal vent
341
268
-
Thr
TGT
[ENA]
¢þ
>WENV181224731
OFDG01002549
[OFDG] metagenome; hydrothermal vent
1338
1411
+
Thr
TGT
[ENA]
¢þ
>WENV181225372
OFDI01000429
[OFDI] metagenome; hydrothermal vent
341
268
-
Thr
TGT
[ENA]
¢þ
>At0937
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
863479
863555
+
Thr
TGT
[Ensembl]
¡û
>At1042
CP000743
Euryarchaeota
Methanococcus aeolicus Nankai-3 [CP000743]
1378480
1378407
-
Thr
TGT
[Ensembl]
¡û
>At1079
CP000609
Euryarchaeota
Methanococcus maripaludis C5 [CP000609]
1517916
1517843
-
Thr
TGT
[Ensembl]
¡û
>At1089
CP000745
Euryarchaeota
Methanococcus maripaludis [CP000745]
1071911
1071984
+
Thr
TGT
[Ensembl]
¡û
>At1120
BX950229
Euryarchaeota
Methanococcus maripaludis S2 [BX950229]
112878
112951
+
Thr
TGT
[Ensembl]
¡û
>At1163
CP000742
Euryarchaeota
Methanococcus vannielii SB [CP000742]
1126952
1127025
+
Thr
TGT
[Ensembl]
¡û
>W1610000320
AAWI01000002
Euryarchaeota
Methanococcus maripaludis C5 [AAWI]
308948
308875
-
Thr
TGT
[ENA]
¡û
>W1610000371
AAWX01000004
Euryarchaeota
Methanococcus vannielii SB [AAWX]
68868
68941
+
Thr
TGT
[ENA]
¡û
>W1610000470
AAZM01000002
Euryarchaeota
Methanococcus maripaludis C7 [AAZM]
701028
700955
-
Thr
TGT
[ENA]
¡û
>W1610000571
ABFP01000001
Euryarchaeota
Methanococcus maripaludis C6 [ABFP]
1631613
1631540
-
Thr
TGT
[ENA]
¡û
>W1610000616
ABHB01000002
Euryarchaeota
Methanococcus voltae A3 [ABHB]
81718
81645
-
Thr
TGT
[ENA]
¡û
>W1610002128
AEDA01000005
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
35497
35424
-
Thr
TGT
[ENA]
¡û
>W1610018879
AQXV01000024
Euryarchaeota
Methanothermococcus thermolithotrophicus DSM 2095 [AQXV]
17013
17086
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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