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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.147799 (41 seq.)
>A171000211
CP000855
Euryarchaeota
Thermococcus onnurineus NA1 [CP000855]
1405094
1405018
-
His
GTG
-
¡û
>A171000513
CP001398
Euryarchaeota
Thermococcus gammatolerans EJ3 EJ3; DSM 15229 [CP001398]
90386
90310
-
His
GTG
-
¡û
>A171000713
CP001463
Euryarchaeota
Thermococcus sibiricus MM 739 [CP001463]
515944
515868
-
His
GTG
-
¡û
>A171001876
CP002372
Euryarchaeota
Thermococcus barophilus MP [CP002372]
1378007
1378083
+
His
GTG
-
¡û
>A171002192
CP002670
Euryarchaeota
Pyrococcus sp. NA2 [CP002670]
427242
427166
-
His
GTG
-
¡û
>A171002575
CP002920
Euryarchaeota
Thermococcus sp. 4557 [CP002920]
1476253
1476329
+
His
GTG
-
¡û
>A171002676
CP002952
Euryarchaeota
Thermococcus sp. AM4 [CP002952]
1493365
1493289
-
His
GTG
-
¡û
>A171003254
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
20702
20778
+
His
GTG
-
¡û
>A171003312
CP003651
Euryarchaeota
Thermococcus cleftensis CL1 [CP003651]
1148427
1148503
+
His
GTG
-
¡û
>A171003366
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
1525683
1525607
-
His
GTG
-
¡û
>A171003794
CP006019
Euryarchaeota
Palaeococcus pacificus DY20341 [CP006019]
937503
937427
-
His
GTG
-
¡û
>A171003866
CP006670
Euryarchaeota
Thermococcus litoralis DSM 5473 [CP006670]
305398
305474
+
His
GTG
-
¡û
>A171004047
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1480950
1481026
+
His
GTG
-
¡û
>A171004233
CP007140
Euryarchaeota
Thermococcus guaymasensis DSM 11113 [CP007140]
773629
773553
-
His
GTG
-
¡û
>A171004296
CP007264
Euryarchaeota
Thermococcus nautili 30-1 [CP007264]
1042473
1042397
-
His
GTG
-
¡û
>A171004431
CP008887
Euryarchaeota
Thermococcus eurythermalis A501 [CP008887]
249233
249309
+
His
GTG
-
¡û
>A171005876
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
1369042
1369118
+
His
GTG
-
¡û
>A171006375
CP012200
Euryarchaeota
Thermococcus sp. 2319x1 [CP012200]
451547
451471
-
His
GTG
-
¡û
>A171006485
CP013050
Euryarchaeota
Thermococcus barophilus CH5 [CP013050]
1705208
1705132
-
His
GTG
-
¡û
>A171006581
CP014750
Euryarchaeota
Thermococcus peptonophilus OG-1 [CP014750]
1026735
1026811
+
His
GTG
-
¡û
>A171006644
CP015520
Euryarchaeota
Thermococcus piezophilus CDGS [CP015520]
821712
821788
+
His
GTG
-
¡û
>A171007108
CP021848
Euryarchaeota
Thermococcus sp. 5-4 [CP021848]
1550260
1550184
-
His
GTG
-
¡û
>A171007537
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
21452
21376
-
His
GTG
-
¡û
>At1781
AL096836
Euryarchaeota
Pyrococcus abyssi [AL096836]
296677
296753
+
His
GTG
[Ensembl]
¡û
>At1843
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
1878576
1878652
+
His
GTG
[Ensembl]
¡û
>At1915
BA000001
Euryarchaeota
Pyrococcus horikoshii OT3 [BA000001]
1640468
1640392
-
His
GTG
[Ensembl]
¡û
>At1959
AP006878
Euryarchaeota
Thermococcus kodakarensis KOD1 [AP006878]
1724444
1724368
-
His
GTG
[Ensembl]
¡û
>WENV170675993
LDZQ01001676
[LDZQ] terrestrial metagenome; oil reservoir sample I2
99
23
-
His
GTG
[ENA]
¢þ
>WENV170676741
LDZS01002098
[LDZS] terrestrial metagenome; oil reservoir sample K3
525
449
-
His
GTG
[ENA]
¢þ
>W1910200313
FJMQ01000092
Euryarchaeota
Thermococcus litoralis [FJMQ]
1533
1457
-
His
GTG
[ENA]
¡û
>W1910230002
FOIW01000003
Euryarchaeota
Thermococcus thioreducens OGL-20 [FOIW]
259002
258926
-
His
GTG
[ENA]
¡û
>W1910597298
LANF01000019
Euryarchaeota
Palaeococcus ferrophilus DSM 13482 [LANF]
10563
10487
-
His
GTG
[ENA]
¡û
>W1610000737
ABSF01000013
Euryarchaeota
Thermococcus barophilus MP [ABSF]
151
75
-
His
GTG
[ENA]
¡û
>W1610000869
ABXN01000007
Euryarchaeota
Thermococcus sp. AM4 [ABXN]
33537
33461
-
His
GTG
[ENA]
¡û
>W1610004941
AHVB01000064
Euryarchaeota
Thermococcus litoralis DSM 5473 [AHVB]
23176
23100
-
His
GTG
[ENA]
¡û
>W1610005575
AKID01000050
Euryarchaeota
Thermococcus sp. PK [AKID]
9275
9351
+
His
GTG
[ENA]
¡û
>W1610548883
JXCG01000008
Euryarchaeota
Thermococcus sp. EP1 [JXCG]
53875
53951
+
His
GTG
[ENA]
¡û
>W1610612455
LGET01000135
Euryarchaeota
Thermococcales archaeon 44_46 [LGET]
99
23
-
His
GTG
[ENA]
¡û
>W1610613053
LGFJ01000069
Euryarchaeota
Thermococcus sp. 40_45 [LGFJ]
525
449
-
His
GTG
[ENA]
¡û
>W1610638243
LIXN01000016
Euryarchaeota
Thermococcus thioreducens DSM 14981 [LIXN]
4114
4038
-
His
GTG
[ENA]
¡û
>W1610717909
LLYW01000001
Euryarchaeota
Thermococcus celericrescens DSM 17994 [LLYW]
6776
6852
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK