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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.148363 (65 seq.)
>W1711043795
LRML01000007
Bacteroidota
Rufibacter roseus [LRML]
219778
219702
-
Met
CAT
[ENA]
¡û
>W1711043837
LRMM01000048
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
27091
27165
+
Met
CAT
[ENA]
¡û
>W1711210164
LXHX01000018
Bacteroidota
Emticicia sp. MM [LXHX]
21367
21441
+
Met
CAT
[ENA]
¡û
>W131053368
AMZY02000008
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
43101
43025
-
Met
CAT
[ENA]
¡û
>W131179046
ARMB01000057
Bacteroidota
Rhodonellum psychrophilum DSM 17998 [ARMB]
231064
231138
+
Met
CAT
[ENA]
¡û
>W131223189
AUBW01000023
Bacteroidota
Algoriphagus terrigena DSM 22685 [AUBW]
72895
72819
-
Met
CAT
[ENA]
¡û
>W1711502445
MKSR01000046
Bacteroidota
Dyadobacter sp. 50-39 [MKSR]
42031
41957
-
Met
CAT
[ENA]
¡û
>W1711704560
MSPQ01000006
Bacteroidota
Algoriphagus marinus am2 [MSPQ]
158843
158919
+
Met
CAT
[ENA]
¡û
>W1711707897
MSSV01000019
Bacteroidota
Algoriphagus ratkowskyi [MSSV]
66563
66487
-
Met
CAT
[ENA]
¡û
>W1711707911
MSSW01000004
Bacteroidota
Algoriphagus antarcticus [MSSW]
2607
2533
-
Met
CAT
[ENA]
¡û
>W1711751669
MUNY01000042
Bacteroidota
Algoriphagus sp. A40 [MUNY]
100313
100389
+
Met
CAT
[ENA]
¡û
>W131180700
ARNI01000006
Bacteroidota
Dyadobacter beijingensis DSM 21582 [ARNI]
351698
351624
-
Met
CAT
[ENA]
¡û
>WENV180695593
OCZS013683000
[OCZS] soil metagenome; soil
80
156
+
Ile2
CAT
[ENA]
¢þ
>WENV181168630
OEIU01571317
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
140
214
+
Ile2
CAT
[ENA]
¢þ
>WENV181222572
OFDC01000011
[OFDC] hot springs metagenome; Water
285458
285532
+
Ile2
CAT
[ENA]
¢þ
>WENV181222675
OFDC01000074
[OFDC] hot springs metagenome; Water
121652
121726
+
Ile2
CAT
[ENA]
¢þ
>WENV181226968
OFDN01000646
[OFDN] hot springs metagenome; Water
804
730
-
Ile2
CAT
[ENA]
¢þ
>WENV181227013
OFDN01000975
[OFDN] hot springs metagenome; Water
863
789
-
Ile2
CAT
[ENA]
¢þ
>WENV181368443
OFQL01005176
[OFQL] freshwater metagenome; Freshwater Lake
902
976
+
Ile2
CAT
[ENA]
¢þ
>WENV181370847
OFQT01020541
[OFQT] freshwater metagenome; Freshwater Lake
169
93
-
Ile2
CAT
[ENA]
¢þ
>WENV181380372
OFRD01068549
[OFRD] wastewater metagenome; Exp Tend CN 100WW
326
400
+
Ile2
CAT
[ENA]
¢þ
>WENV181401052
OFSF01047750
[OFSF] wastewater metagenome; Exp Tend VB 100WW
486
412
-
Ile2
CAT
[ENA]
¢þ
>W141148145
AWXR01000003
Bacteroidota
Rhodonellum psychrophilum GCM71 = DSM 17998 [AWXR]
120760
120834
+
Met
CAT
[ENA]
¡û
>W141151945
AXBK01000013
Bacteroidota
Adhaeribacter aquaticus DSM 16391 [AXBK]
194393
194467
+
Met
CAT
[ENA]
¡û
>WENV183092784
OLLL01000124
[OLLL] soil metagenome; soil
139272
139196
-
Ile2
CAT
[ENA]
¢þ
>WENV170634869
JAHE01102956
[JAHE] sediment metagenome; lake sediment
193
269
+
Met
CAT
[ENA]
¢þ
>WENV170646293
JQGG01148273
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
164
240
+
Met
CAT
[ENA]
¢þ
>WENV170990175
MWVZ01249757
[MWVZ] soil metagenome; MS6-5 sample; Antarctic (ecotone) soil
324
250
-
Met
CAT
[ENA]
¢þ
>WENV170990624
MWWA01023349
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
820
896
+
Met
CAT
[ENA]
¢þ
>WENV170991273
MWWA01151111
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
165
239
+
Met
CAT
[ENA]
¢þ
>WENV170991595
MWWA01254062
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
169
243
+
Met
CAT
[ENA]
¢þ
>WENV170991732
MWWA01301877
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
242
316
+
Met
CAT
[ENA]
¢þ
>WENV171003050
NKIC01008165
[NKIC] algae metagenome; Clonal culture of Asterionella formosa BG1 isolated from Esthwaite Water
47639
47565
-
Met
CAT
[ENA]
¢þ
>W141731398
JNJB01000010
Bacteroidota
Dyadobacter crusticola DSM 16708 [JNJB]
75891
75965
+
Met
CAT
[ENA]
¡û
>W09108947
ABTS01000004
Bacteroidota
Dyadobacter fermentans DSM 18053 [ABTS]
312433
312357
-
Met
CAT
[ENA]
¡û
>W1910496864
FXVD01000018
Bacteroidota
Emticicia oligotrophica [FXVD]
21367
21441
+
Met
CAT
[ENA]
¡û
>W1910496875
FXVF01000078
Bacteroidota
Emticicia oligotrophica [FXVF]
890
816
-
Met
CAT
[ENA]
¡û
>W1910698787
MEPB01000033
Bacteroidota
Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 [MEPB]
61202
61276
+
Met
CAT
[ENA]
¡û
>C09103927
CP001619
Bacteroidota
Dyadobacter fermentans DSM 18053 [CP001619]
3691649
3691725
+
Met
CAT
[Ensembl]
¡û
>W1911775233
QXML01000010
Bacteroidota
Algoriphagus lacus N3 [QXML]
114532
114458
-
Met
CAT
[ENA]
¡û
>W1810195634
PKRS01000002
Bacteroidota
Emticicia sp. TH156 [PKRS]
474683
474759
+
Met
CAT
[ENA]
¡û
>W1810392833
PYAS01000009
Bacteroidota
Dyadobacter jiangsuensis DSM 29057 [PYAS]
61597
61522
-
Met
CAT
[ENA]
¡û
>W1810596498
QGGO01000004
Bacteroidota
Arcicella aurantiaca DSM 22214 [QGGO]
249461
249387
-
Met
CAT
[ENA]
¡û
>W1810686035
QKZT01000010
Bacteroidota
Algoriphagus chordae DSM 19830 [QKZT]
88595
88669
+
Met
CAT
[ENA]
¡û
>W1810686075
QKZU01000015
Bacteroidota
Algoriphagus ratkowskyi DSM 22686 [QKZU]
66896
66821
-
Met
CAT
[ENA]
¡û
>W1810694567
QLMC01000005
Bacteroidota
Larkinella arboricola DSM 21851 [QLMC]
272064
272138
+
Met
CAT
[ENA]
¡û
>W1810705058
QMIK01000004
Bacteroidota
Cognataquiflexum aquatile Z0201 [QMIK]
646070
646144
+
Met
CAT
[ENA]
¡û
>W1810745144
QOWE01000014
Bacteroidota
Larkinella punicea zzj9 [QOWE]
199053
199127
+
Met
CAT
[ENA]
¡û
>W1810885302
QUNF01000007
Bacteroidota
Algoriphagus antarcticus DSM 15986 [QUNF]
179672
179746
+
Met
CAT
[ENA]
¡û
>W1810913038
QVMT01000007
Bacteroidota
Emticicia sp. C21 [QVMT]
61085
61161
+
Met
CAT
[ENA]
¡û
>C151071875
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
2421298
2421372
+
Met
CAT
[Ensembl]
¡û
>C121003570
CP002961
Bacteroidota
Emticicia oligotrophica DSM 17448 [CP002961]
3175830
3175904
+
Met
CAT
[Ensembl]
¡û
>C161028424
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
4060977
4060901
-
Met
CAT
[Ensembl]
¡û
>C161043256
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
3908810
3908884
+
Met
CAT
[Ensembl]
¡û
>W1610050108
BBFN01000004
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
22505
22429
-
Met
CAT
[ENA]
¡û
>W121084771
AKIS01000051
Bacteroidota
Pontibacter sp. BAB1700 [AKIS]
22205
22131
-
Met
CAT
[ENA]
¡û
>W1610885094
LRML01000007
Bacteroidota
Rufibacter roseus [LRML]
219778
219702
-
Met
CAT
[ENA]
¡û
>W1610885136
LRMM01000048
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
27091
27165
+
Met
CAT
[ENA]
¡û
>W1610997926
LXHX01000018
Bacteroidota
Emticicia sp. MM [LXHX]
21367
21441
+
Met
CAT
[ENA]
¡û
>W1710046507
BBFN01000004
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [BBFN]
22505
22429
-
Met
CAT
[ENA]
¡û
>W1710509399
FMXE01000009
Bacteroidota
Algoriphagus alkaliphilus [FMXE]
90310
90234
-
Met
CAT
[ENA]
¡û
>W1710532187
FNQC01000003
Bacteroidota
Rhodonellum ikkaensis [FNQC]
231023
231097
+
Met
CAT
[ENA]
¡û
>W1710539776
FNVR01000007
Bacteroidota
Algoriphagus boritolerans DSM 17298 = JCM 18970 [FNVR]
22892
22816
-
Met
CAT
[ENA]
¡û
>W1710556695
FOKK01000003
Bacteroidota
Algoriphagus aquimarinus [FOKK]
346480
346404
-
Met
CAT
[ENA]
¡û
>W1710577981
FPBF01000003
Bacteroidota
Algoriphagus locisalis [FPBF]
61419
61495
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK