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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150673 (46 seq.)
>W131108955
APGP01000069
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
8319
8243
-
His
GTG
[ENA]
¡û
>W131218295
ATXO01000006
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
140037
140113
+
His
GTG
[ENA]
¡û
>C006900
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
1400474
1400550
+
His
GTG
[Ensembl]
¡û
>WENV180014227
FPIC01105260
[FPIC] soil metagenome; Soil
569
493
-
His
GTG
[ENA]
¢þ
>WENV181226023
OFDK01000001
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
192563
192487
-
His
GTG
[ENA]
¢þ
>WENV181285446
OFGS01000484
[OFGS] hot springs metagenome; Water and soil
1918
1994
+
His
GTG
[ENA]
¢þ
>WENV181408729
OGCH01010697
[OGCH] hot springs metagenome; hot springs
792
868
+
His
GTG
[ENA]
¢þ
>WENV170970361
MTKW01065116
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
253
177
-
His
GTG
[ENA]
¢þ
>C191131093
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
693914
693990
+
His
GTG
-
¡û
>W09104531
AALW01000002
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [AALW]
70077
70001
-
His
GTG
[ENA]
¡û
>W09113808
ABYZ01000003
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
101208
101284
+
His
GTG
[ENA]
¡û
>C09100842
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
2324034
2323958
-
His
GTG
[Ensembl]
¡û
>W1911155347
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
2477241
2477165
-
His
GTG
[ENA]
¡û
>W1911244026
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
1993755
1993831
+
His
GTG
[ENA]
¡û
>W1911244087
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
2030324
2030248
-
His
GTG
[ENA]
¡û
>W1911244128
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
2583292
2583216
-
His
GTG
[ENA]
¡û
>W1911244164
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
544762
544838
+
His
GTG
[ENA]
¡û
>W1911244232
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
2493404
2493328
-
His
GTG
[ENA]
¡û
>W1911572527
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
455426
455502
+
His
GTG
[ENA]
¡û
>W1911572610
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
369893
369817
-
His
GTG
[ENA]
¡û
>W1911572622
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
539640
539716
+
His
GTG
[ENA]
¡û
>W1810052232
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
11776
11852
+
His
GTG
[ENA]
¡û
>W1810071880
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
493759
493835
+
His
GTG
[ENA]
¡û
>W1810071929
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
1527884
1527960
+
His
GTG
[ENA]
¡û
>W1810072012
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
293645
293569
-
His
GTG
[ENA]
¡û
>W1810368037
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
156801
156725
-
His
GTG
[ENA]
¡û
>C10103658
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
2129964
2129888
-
His
GTG
[Ensembl]
¡û
>C11105197
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
618339
618415
+
His
GTG
[Ensembl]
¡û
>C11105375
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
425197
425273
+
His
GTG
[Ensembl]
¡û
>C11105422
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
565433
565509
+
His
GTG
[Ensembl]
¡û
>C11105482
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
2074331
2074255
-
His
GTG
[Ensembl]
¡û
>C11105864
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
1980014
1979938
-
His
GTG
[Ensembl]
¡û
>W11139376
AEKB01000003
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
99591
99515
-
His
GTG
[ENA]
¡û
>W11139432
AEKC01000023
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
776
700
-
His
GTG
[ENA]
¡û
>W11139461
AEKD01000008
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
3329
3405
+
His
GTG
[ENA]
¡û
>W1511563957
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
2579740
2579664
-
His
GTG
[ENA]
¡û
>W1511563996
LACN01000006
Bacillota
Caldicellulosiruptor naganoensis NA10 [LACN]
997137
997061
-
His
GTG
[ENA]
¡û
>W1511564041
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
818498
818574
+
His
GTG
[ENA]
¡û
>W1710603730
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
979697
979773
+
His
GTG
[ENA]
¡û
>W1710603828
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
1477584
1477508
-
His
GTG
[ENA]
¡û
>W1710603915
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
2430891
2430815
-
His
GTG
[ENA]
¡û
>W1710605078
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
1489540
1489464
-
His
GTG
[ENA]
¡û
>W1710609652
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
898340
898416
+
His
GTG
[ENA]
¡û
>W1710609738
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
75296
75220
-
His
GTG
[ENA]
¡û
>W1710609759
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
2595971
2595895
-
His
GTG
[ENA]
¡û
>W1710609805
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
2588514
2588438
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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