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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.150676 (41 seq.)
>W131218328
ATXO01000022
Bacillota
Caldicellulosiruptor acetigenus DSM 7040 [ATXO]
15286
15362
+
Asp
GTC
[ENA]
¡û
>WENV180014255
FPIC01117003
[FPIC] soil metagenome; Soil
66
142
+
Asp
GTC
[ENA]
¢þ
>WENV181226080
OFDK01000020
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
69365
69289
-
Asp
GTC
[ENA]
¢þ
>WENV181285478
OFGS01000862
[OFGS] hot springs metagenome; Water and soil
973
1049
+
Asp
GTC
[ENA]
¢þ
>WENV181408838
OGCH01016453
[OGCH] hot springs metagenome; hot springs
691
615
-
Asp
GTC
[ENA]
¢þ
>WENV181411905
OGCI01057911
[OGCI] hot springs metagenome; Hot spring water
719
795
+
Asp
GTC
[ENA]
¢þ
>W09113818
ABYZ01000004
Bacillota
Caldicellulosiruptor bescii DSM 6725 [ABYZ]
170777
170701
-
Asp
GTC
[ENA]
¡û
>C09100825
CP001393
Bacillota
Caldicellulosiruptor bescii DSM 6725 [CP001393]
843843
843919
+
Asp
GTC
[Ensembl]
¡û
>W1911155328
NPJY01000001
Bacillota
Caldicellulosiruptor bescii RKCB122 [NPJY]
1026497
1026573
+
Asp
GTC
[ENA]
¡û
>W1911244014
NSHA01000001
Bacillota
Caldicellulosiruptor bescii RKCB123 [NSHA]
183948
184024
+
Asp
GTC
[ENA]
¡û
>W1911244066
NSHB01000001
Bacillota
Caldicellulosiruptor bescii RKCB125 [NSHB]
572690
572766
+
Asp
GTC
[ENA]
¡û
>W1911244116
NSHC01000001
Bacillota
Caldicellulosiruptor bescii RKCB126 [NSHC]
1125651
1125727
+
Asp
GTC
[ENA]
¡û
>W1911244193
NSHD01000001
Bacillota
Caldicellulosiruptor bescii RKCB121 [NSHD]
1976359
1976283
-
Asp
GTC
[ENA]
¡û
>W1911244247
NSHE01000001
Bacillota
Caldicellulosiruptor bescii RKCB120 [NSHE]
1383693
1383617
-
Asp
GTC
[ENA]
¡û
>W1911572556
PDCA01000001
Bacillota
Caldicellulosiruptor bescii RKCB124 [PDCA]
1916153
1916077
-
Asp
GTC
[ENA]
¡û
>W1911572580
PDCB01000001
Bacillota
Caldicellulosiruptor bescii RKCB129 [PDCB]
1821200
1821276
+
Asp
GTC
[ENA]
¡û
>W1911572651
PDCD01000002
Bacillota
Caldicellulosiruptor bescii RKCB128 [PDCD]
2006646
2006570
-
Asp
GTC
[ENA]
¡û
>W1810052270
PDCC01000001
Bacillota
Caldicellulosiruptor bescii RKCB127 [PDCC]
1460699
1460623
-
Asp
GTC
[ENA]
¡û
>W1810071909
PEEZ01000002
Bacillota
Caldicellulosiruptor bescii RKCB131 [PEEZ]
1960624
1960548
-
Asp
GTC
[ENA]
¡û
>W1810071965
PEFA01000001
Bacillota
Caldicellulosiruptor bescii RKCB130 [PEFA]
74560
74484
-
Asp
GTC
[ENA]
¡û
>W1810071981
PEFB01000001
Bacillota
Caldicellulosiruptor bescii RKCB133 [PEFB]
1747244
1747320
+
Asp
GTC
[ENA]
¡û
>W1810368001
PVZD01000002
Bacillota
Caldicellulosiruptor bescii RKCB132 [PVZD]
1610255
1610331
+
Asp
GTC
[ENA]
¡û
>C10103628
CP002164
Bacillota
Caldicellulosiruptor obsidiansis OB47 [CP002164]
802288
802364
+
Asp
GTC
[Ensembl]
¡û
>C11105224
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1971186
1971110
-
Asp
GTC
[Ensembl]
¡û
>C11105390
CP002326
Bacillota
Caldicellulosiruptor acetigenus I77R1B [CP002326]
2028789
2028713
-
Asp
GTC
[Ensembl]
¡û
>C11105449
CP002330
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [CP002330]
2066646
2066570
-
Asp
GTC
[Ensembl]
¡û
>C11105463
CP003001
Bacillota
Caldicellulosiruptor acetigenus 6A [CP003001]
461988
462064
+
Asp
GTC
[Ensembl]
¡û
>C11105847
CP002216
Bacillota
Caldicellulosiruptor owensensis OL [CP002216]
696521
696597
+
Asp
GTC
[Ensembl]
¡û
>W11139383
AEKB01000006
Bacillota
Caldicellulosiruptor kronotskyensis 2002 [AEKB]
14380
14456
+
Asp
GTC
[ENA]
¡û
>W11139412
AEKC01000009
Bacillota
Caldicellulosiruptor acetigenus 177R1B [AEKC]
33089
33165
+
Asp
GTC
[ENA]
¡û
>W11139483
AEKD01000045
Bacillota
Caldicellulosiruptor acetigenus 6A [AEKD]
5372
5296
-
Asp
GTC
[ENA]
¡û
>W1511563945
LACM01000001
Bacillota
Caldicellulosiruptor danielii Wai35.B1 [LACM]
1046542
1046618
+
Asp
GTC
[ENA]
¡û
>W1511564075
LACO01000002
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
104471
104395
-
Asp
GTC
[ENA]
¡û
>W1710603757
FUZJ01000001
Bacillota
Caldicellulosiruptor bescii [FUZJ]
2460104
2460028
-
Asp
GTC
[ENA]
¡û
>W1710603818
FUZL01000001
Bacillota
Caldicellulosiruptor bescii [FUZL]
2918734
2918810
+
Asp
GTC
[ENA]
¡û
>W1710603896
FUZN01000002
Bacillota
Caldicellulosiruptor bescii [FUZN]
946500
946576
+
Asp
GTC
[ENA]
¡û
>W1710605057
FWDH01000001
Bacillota
Caldicellulosiruptor bescii [FWDH]
9137
9213
+
Asp
GTC
[ENA]
¡û
>W1710609679
FXXC01000001
Bacillota
Caldicellulosiruptor bescii [FXXC]
2378747
2378671
-
Asp
GTC
[ENA]
¡û
>W1710609710
FXXD01000002
Bacillota
Caldicellulosiruptor bescii [FXXD]
1083373
1083449
+
Asp
GTC
[ENA]
¡û
>W1710609748
FXXE01000001
Bacillota
Caldicellulosiruptor bescii [FXXE]
1115568
1115644
+
Asp
GTC
[ENA]
¡û
>W1710609793
FXXF01000001
Bacillota
Caldicellulosiruptor bescii [FXXF]
1108324
1108400
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK