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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151879 (100 seq.)
>W1710805124
LJZT01000040
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
18907
18834
-
Arg
ACG
[ENA]
¡û
>W1710888856
LNAA01000014
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
49419
49344
-
Arg
ACG
[ENA]
¡û
>W1711088563
LSYZ01000414
Cyanobacteriota
Leptolyngbya valderiana BDU 20041 [LSYZ]
698
771
+
Arg
ACG
[ENA]
¡û
>W1711088580
LSZA01000044
Cyanobacteriota
Phormidium willei BDU 130791 [LSZA]
3715
3642
-
Arg
ACG
[ENA]
¡û
>W1711190054
LWRO01000047
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
8152
8225
+
Arg
ACG
[ENA]
¡û
>W1711229700
LXYR01000019
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
32214
32290
+
Arg
ACG
[ENA]
¡û
>W1711460776
MJGC01000050
Cyanobacteriota
Desertifilum tharense IPPAS B-1220 [MJGC]
3998
3925
-
Arg
ACG
[ENA]
¡û
>W1711509549
MKZR01000001
Cyanobacteriota
Moorena producens NAK12DEC93-3La [MKZR]
490273
490200
-
Arg
ACG
[ENA]
¡û
>W1711509603
MKZS01000001
Cyanobacteriota
Moorena bouillonii PNG5-198 [MKZS]
531034
530961
-
Arg
ACG
[ENA]
¡û
>W1711510404
MLAW01000106
Cyanobacteriota
Roseofilum reptotaenium AO1-A [MLAW]
1837
1910
+
Arg
ACG
[ENA]
¡û
>W1711629781
MPPI01000011
Cyanobacteriota
Phormidesmis priestleyi ULC007 [MPPI]
12847
12774
-
Arg
ACG
[ENA]
¡û
>C171000063
AP014638
Cyanobacteriota
Leptolyngbya boryana IAM M-101 [AP014638]
32175
32102
-
Arg
ACG
-
¡û
>C171000126
AP014642
Cyanobacteriota
Leptolyngbya boryana dg5 [AP014642]
32175
32102
-
Arg
ACG
-
¡û
>C171064228
CP017599
Cyanobacteriota
Moorena producens PAL-8-15-08-1 [CP017599]
584454
584381
-
Arg
ACG
-
¡û
>W131036298
ALVM01000010
Cyanobacteriota
Leptolyngbya boryana PCC 6306 [ALVM]
6091392
6091465
+
Arg
ACG
[ENA]
¡û
>W131036463
ALVR01000007
Cyanobacteriota
Spirulina subsalsa PCC 9445 [ALVR]
577460
577533
+
Arg
ACG
[ENA]
¡û
>W131058617
ANFQ01000215
Cyanobacteriota
Baaleninema simplex PCC 7105 [ANFQ]
29872
29945
+
Arg
ACG
[ENA]
¡û
>W131063274
ANKO01000070
Cyanobacteriota
Oscillatoria sp. PCC 10802 [ANKO]
3548
3621
+
Arg
ACG
[ENA]
¡û
>W131166609
ARCP01000005
Cyanobacteriota
filamentous cyanobacterium ESFC-1 [ARCP]
113803
113730
-
Arg
ACG
[ENA]
¡û
>w021637
AAVU01000031
Cyanobacteriota
Lyngbya sp. PCC 8106 [AAVU]
23906
23830
-
Arg
ACG
[ENA]
¡û
>W141004305
AFXD01000052
Cyanobacteriota
Arthrospira platensis C1 [AFXD]
58989
58916
-
Arg
ACG
[ENA]
¡û
>W141038202
ALVK01000005
Cyanobacteriota
Pseudanabaena sp. PCC 6802 [ALVK]
62916
62843
-
Arg
ACG
[ENA]
¡û
>W141038422
ALVU02000001
Cyanobacteriota
Synechocystis sp. PCC 7509 [ALVU]
2609018
2608945
-
Arg
ACG
[ENA]
¡û
>W141038551
ALVY01000184
Cyanobacteriota
Gloeocapsa sp. PCC 73106 [ALVY]
3504
3431
-
Arg
ACG
[ENA]
¡û
>WENV180587996
OCOO01137592
[OCOO] marine metagenome; seawater
325
252
-
Arg
ACG
[ENA]
¢þ
>W141067414
ASAK01000007
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 126/8 [ASAK]
176740
176667
-
Arg
ACG
[ENA]
¡û
>W141091935
AUZM01000011
Cyanobacteriota
Lyngbya aestuarii BL J [AUZM]
3734
3661
-
Arg
ACG
[ENA]
¡û
>W08010802
ABRS01000124
Cyanobacteriota
Coleofasciculus chthonoplastes PCC 7420 [ABRS]
119980
119907
-
Arg
ACG
[ENA]
¡û
>W08011536
ABVJ01000009
Cyanobacteriota
Cyanothece sp. PCC 7425 [ABVJ]
123185
123112
-
Arg
ACG
[ENA]
¡û
>W141096708
AVFS01000089
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 15 [AVFS]
3784
3857
+
Arg
ACG
[ENA]
¡û
>W141096763
AVFT01000164
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 34 [AVFT]
3784
3857
+
Arg
ACG
[ENA]
¡û
>W141096772
AVFU01000013
Cyanobacteriota
Planktothrix mougeotii NIVA-CYA 405 [AVFU]
697
624
-
Arg
ACG
[ENA]
¡û
>W141096812
AVFV01000083
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 406 [AVFV]
3801
3874
+
Arg
ACG
[ENA]
¡û
>W141096851
AVFW01000085
Cyanobacteriota
Planktothrix rubescens NIVA-CYA 407 [AVFW]
3784
3857
+
Arg
ACG
[ENA]
¡û
>W141096877
AVFX01000012
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 540 [AVFX]
42486
42559
+
Arg
ACG
[ENA]
¡û
>W141096914
AVFY01000023
Cyanobacteriota
Planktothrix agardhii NIVA-CYA 56/3 [AVFY]
42644
42717
+
Arg
ACG
[ENA]
¡û
>W141096969
AVFZ01000123
Cyanobacteriota
Planktothrix prolifica NIVA-CYA 98 [AVFZ]
476
403
-
Arg
ACG
[ENA]
¡û
>WENV181234532
OFEU01000294
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
19596
19669
+
Arg
ACG
[ENA]
¢þ
>W141240124
CAFN01000060
Cyanobacteriota
Limnospira indica PCC 8005 [CAFN]
38188
38261
+
Arg
ACG
[ENA]
¡û
>C08000535
CP000828
Cyanobacteriota
Acaryochloris marina MBIC11017 [CP000828]
1924427
1924500
+
Arg
TCG
[Ensembl]
¡û
>C08000569
CP000828
Cyanobacteriota
Acaryochloris marina MBIC11017 [CP000828]
119056
118983
-
Arg
ACG
[Ensembl]
¡û
>WENV183702483
PDVI01000364
[PDVI] alkali sediment metagenome; glacial lake sediment
5707
5634
-
Arg
ACG
[ENA]
¢þ
>WENV170133807
CENU01052761
[CENU] marine metagenome genome assembly TARA_025_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
161
86
-
Arg
ACG
[ENA]
¢þ
>WENV170872468
MDTB01218432
[MDTB] marine metagenome; seawater
52249
52174
-
Arg
ACG
[ENA]
¢þ
>WENV170998617
MWWJ01059104
[MWWJ] soil metagenome; CN-4 sample; Antarctic (ecotone) soil
168
95
-
Arg
ACG
[ENA]
¢þ
>CHL1810006808
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
36642
36715
+
Arg
ACG
[ENA]
¡û
>CHL1810011898
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
38192
38267
+
Arg
ACG
[ENA]
¡û
>CHL1810014962
KM462877
Viridiplantae
Gloeotilopsis sterilis (KM462877)
111029
110956
-
Arg
ACG
[ENA]
¡û
>CHL1810040736
KY407658
Viridiplantae
Pseudocharacium americanum (KY407658)
122601
122674
+
Arg
ACG
[ENA]
¡û
>CHL1810040764
KY407659
Viridiplantae
Ignatius tetrasporus (KY407659)
122558
122631
+
Arg
ACG
[ENA]
¡û
>CHL1810040791
KY407660
Viridiplantae
Neodangemannia microcystis (KY407660)
8221
8297
+
Arg
ACG
[ENA]
¡û
>CHL1830001357
KX013545
Viridiplantae
Cymbomonas tetramitiformis PLY262 (KX013545)
72414
72488
+
Arg
ACG
[ENA]
¡û
>C181004810
AP018203
Cyanobacteriota
Leptolyngbya boryana NIES-2135 [AP018203]
647515
647588
+
Arg
ACG
-
¡û
>C181169685
CP028914
Cyanobacteriota
Arthrospira sp. TJSD092 [CP028914]
2398076
2398003
-
Arg
ACG
-
¡û
>C191000817
AP017991
Cyanobacteriota
Planktothrix agardhii NIES-204 [AP017991]
1641184
1641111
-
Arg
ACG
-
¡û
>W141701077
JMKF01000028
Cyanobacteriota
[Leptolyngbya] sp. JSC-1 JSC-1 [JMKF]
57832
57905
+
Arg
ACG
[ENA]
¡û
>W09113176
ABYK01000077
Cyanobacteriota
Limnospira maxima CS-328 [ABYK]
10705
10632
-
Arg
ACG
[ENA]
¡û
>W09125758
ACIR01000068
Cyanobacteriota
Trichormus azollae 708 [ACIR]
1300
1227
-
Arg
ACG
[ENA]
¡û
>W09134557
ACSK01001382
Cyanobacteriota
Arthrospira platensis str. Paraca [ACSK]
179
106
-
Arg
ACG
[ENA]
¡û
>C09103572
CP001344
Cyanobacteriota
Cyanothece sp. PCC 7425 [CP001344]
1001694
1001767
+
Arg
ACG
[Ensembl]
¡û
>W1910175468
BJCD01000034
Cyanobacteriota
Planktothrix agardhii CCAP 1459/11A [BJCD]
3912
3985
+
Arg
ACG
[ENA]
¡û
>W1910194170
CZCS01000229
Cyanobacteriota
Planktothrix paucivesiculata PCC 9631 [CZCS]
35570
35497
-
Arg
ACG
[ENA]
¡û
>W1910194183
CZCT02000074
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
30612
30539
-
Arg
ACG
[ENA]
¡û
>W1910194237
CZCU01000136
Cyanobacteriota
Planktothrix serta PCC 8927 [CZCU]
308832
308905
+
Arg
ACG
[ENA]
¡û
>W1910194285
CZCZ01000006
Cyanobacteriota
Planktothrix rubescens 7821 [CZCZ]
946450
946377
-
Arg
ACG
[ENA]
¡û
>W1910194307
CZDF01000132
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
1544250
1544177
-
Arg
ACG
[ENA]
¡û
>W1910339352
FSSI01000009
Cyanobacteriota
Phormidium lacuna HE10JO [FSSI]
78044
78117
+
Arg
ACG
[ENA]
¡û
>W1910339399
FSSI02000009
Cyanobacteriota
Phormidium lacuna HE10JO [FSSI]
78044
78117
+
Arg
ACG
[ENA]
¡û
>W1911204863
NRIU01001727
Cyanobacteriota
Geitlerinema sp. FC II [NRIU]
4184
4111
-
Arg
ACG
[ENA]
¡û
>W1810267625
PQWO01000003
Cyanobacteriota
Acaryochloris thomasi RCC1774 [PQWO]
211554
211627
+
Arg
ACG
[ENA]
¡û
>W1810267672
PQWO01000038
Cyanobacteriota
Acaryochloris thomasi RCC1774 [PQWO]
9041
9116
+
Arg
TCG
[ENA]
¡û
>W1810366256
PVWG01000011
Cyanobacteriota
Phormidesmis priestleyi ULC007 [PVWG]
12809
12736
-
Arg
ACG
[ENA]
¡û
>W1810366404
PVWK01000079
Cyanobacteriota
Stenomitos frigidus ULC18 [PVWK]
76098
76025
-
Arg
ACG
[ENA]
¡û
>W10111324
ADDH01000009
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
61998
62071
+
Arg
ACG
[ENA]
¡û
>W11114267
ADDH01000009
Cyanobacteriota
Limnospira indica PCC 8005 [ADDH]
61998
62071
+
Arg
ACG
[ENA]
¡û
>C11115561
CP002059
Cyanobacteriota
Nostoc azollae' 0708 [CP002059]
2744942
2744869
-
Arg
ACG
[Ensembl]
¡û
>W1511108028
JJML01000072
Cyanobacteriota
Neosynechococcus sphagnicola sy1 CAUP A 1101 [JJML]
3276
3203
-
Arg
ACG
[ENA]
¡û
>W1511324012
JQFA01000002
Cyanobacteriota
Leptolyngbya sp. KIOST-1 [JQFA]
3475664
3475591
-
Arg
ACG
[ENA]
¡û
>W11143165
AEPQ01000174
Cyanobacteriota
Moorena producens 3L [AEPQ]
4493
4566
+
Arg
ACG
[ENA]
¡û
>W1511582895
LATL02000068
Cyanobacteriota
Limnoraphis robusta CS-951 [LATL]
55876
55949
+
Arg
ACG
[ENA]
¡û
>W1511585659
LAYT01000069
Cyanobacteriota
Arthrospira sp. TJSD091 [LAYT]
126614
126541
-
Arg
ACG
[ENA]
¡û
>W11160111
AFEJ01000041
Cyanobacteriota
Acaryochloris sp. CCMEE 5410 [AFEJ]
20769
20842
+
Arg
ACG
[ENA]
¡û
>W11160116
AFEJ01000154
Cyanobacteriota
Acaryochloris sp. CCMEE 5410 [AFEJ]
10198
10125
-
Arg
TCG
[ENA]
¡û
>C161002683
AP017308
Cyanobacteriota
Leptolyngbya sp. NIES-3755 [AP017308]
5992655
5992582
-
Arg
ACG
[Ensembl]
¡û
>C161002777
AP017367
Cyanobacteriota
Leptolyngbya sp. O-77 [AP017367]
4155352
4155428
+
Arg
ACG
[Ensembl]
¡û
>C161049387
CP013008
Cyanobacteriota
Arthrospira platensis YZ [CP013008]
1289355
1289428
+
Arg
ACG
-
¡û
>C161103146
FO818640
Cyanobacteriota
Limnospira indica PCC 8005 [FO818640]
3253379
3253452
+
Arg
ACG
-
¡û
>W1610057135
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
221762
221689
-
Arg
ACG
[ENA]
¡û
>C131004403
CP003591
Cyanobacteriota
Geitlerinema sp. PCC 7407 [CP003591]
3947354
3947281
-
Arg
ACG
[Ensembl]
¡û
>C131004477
CP003594
Cyanobacteriota
Synechococcus sp. PCC 7502 [CP003594]
2423530
2423603
+
Arg
ACG
[Ensembl]
¡û
>C131004681
CP003607
Cyanobacteriota
Oscillatoria acuminata PCC 6304 [CP003607]
3688644
3688571
-
Arg
ACG
[Ensembl]
¡û
>C131004813
CP003620
Cyanobacteriota
Crinalium epipsammum PCC 9333 [CP003620]
4198519
4198592
+
Arg
ACG
[Ensembl]
¡û
>C131004899
CP003630
Cyanobacteriota
Allocoleopsis franciscana PCC 7113 [CP003630]
1326874
1326801
-
Arg
ACG
[Ensembl]
¡û
>W1610668981
LJZT01000040
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
18907
18834
-
Arg
ACG
[ENA]
¡û
>W1610749234
LNAA01000014
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
49419
49344
-
Arg
ACG
[ENA]
¡û
>W1610923102
LSYZ01000414
Cyanobacteriota
Leptolyngbya valderiana BDU 20041 [LSYZ]
698
771
+
Arg
ACG
[ENA]
¡û
>W1610923119
LSZA01000044
Cyanobacteriota
Phormidium willei BDU 130791 [LSZA]
3715
3642
-
Arg
ACG
[ENA]
¡û
>W1610992173
LWRO01000047
Cyanobacteriota
Geitlerinema sp. BBD BBD 1991-9 [LWRO]
8152
8225
+
Arg
ACG
[ENA]
¡û
>W1611013570
LXYR01000019
Cyanobacteriota
Phormidesmis priestleyi BC1401 [LXYR]
32214
32290
+
Arg
ACG
[ENA]
¡û
>W1710053834
BBWW01000001
Cyanobacteriota
Leptolyngbya sp. NIES-2104 [BBWW]
221762
221689
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK