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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151982 (25 seq.)
>A171000853
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
422650
422726
+
Ala
GGC
-
¡û
>A171001021
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1683177
1683101
-
Ala
GGC
-
¡û
>A171001266
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1740718
1740794
+
Ala
GGC
-
¡û
>A171002203
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
338363
338439
+
Ala
GGC
-
¡û
>A171004480
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1531216
1531292
+
Ala
GGC
-
¡û
>WENV180287712
OBIL01000797
[OBIL] metagenome; hydrothermal vent
267
191
-
Ala
GGC
[ENA]
¢þ
>WENV180317075
OBKJ01017161
[OBKJ] metagenome; hydrothermal vent
154
78
-
Ala
GGC
[ENA]
¢þ
>WENV180332375
OBLD01001496
[OBLD] metagenome; water
1120
1046
-
Ala
GGC
[ENA]
¢þ
>WENV181206283
OFAT01002497
[OFAT] metagenome; hydrothermal vent
884
959
+
Ala
GGC
[ENA]
¢þ
>WENV181207321
OFAY01012839
[OFAY] metagenome; hydrothermal vent
492
568
+
Ala
GGC
[ENA]
¢þ
>WENV181207950
OFBA01004301
[OFBA] metagenome; hydrothermal vent
277
201
-
Ala
GGC
[ENA]
¢þ
>WENV181208880
OFBC01019067
[OFBC] metagenome; hydrothermal vent
181
106
-
Ala
GGC
[ENA]
¢þ
>WENV181213065
OFBU01007669
[OFBU] metagenome; hydrothermal vent
816
892
+
Ala
GGC
[ENA]
¢þ
>WENV181213549
OFBV01007838
[OFBV] metagenome; hydrothermal vent
910
986
+
Ala
GGC
[ENA]
¢þ
>WENV181214135
OFBW01015010
[OFBW] metagenome; hydrothermal vent
366
291
-
Ala
GGC
[ENA]
¢þ
>WENV181214498
OFBY01000654
[OFBY] metagenome; hydrothermal vent
3631
3706
+
Ala
GGC
[ENA]
¢þ
>WENV181215470
OFCA01000591
[OFCA] metagenome; hydrothermal vent
640
564
-
Ala
GGC
[ENA]
¢þ
>WENV181223953
OFDD01004508
[OFDD] metagenome; hydrothermal vent
338
263
-
Ala
GGC
[ENA]
¢þ
>WENV181224784
OFDG01004329
[OFDG] metagenome; hydrothermal vent
891
966
+
Ala
GGC
[ENA]
¢þ
>WENV181225459
OFDI01002213
[OFDI] metagenome; hydrothermal vent
588
663
+
Ala
GGC
[ENA]
¢þ
>At0950
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
227780
227704
-
Ala
GGC
[Ensembl]
¡û
>W1610001113
ACQW01000004
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
25466
25542
+
Ala
GGC
[ENA]
¡û
>W1610001540
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
536320
536396
+
Ala
GGC
[ENA]
¡û
>W1610001627
ADCA01000001
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
119894
119818
-
Ala
GGC
[ENA]
¡û
>W1610004281
AGJL01000002
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
2427
2351
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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