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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151983 (37 seq.)
>A171000863
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
1100228
1100304
+
Val
GAC
-
¡û
>A171001014
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
1730500
1730576
+
Val
GAC
-
¡û
>A171001268
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1666187
1666111
-
Val
GAC
-
¡û
>A171001495
CP002009
Euryarchaeota
Methanocaldococcus infernus ME [CP002009]
1124910
1124834
-
Val
GAC
-
¡û
>A171002214
CP002737
Euryarchaeota
Methanotorris igneus Kol 5 [CP002737]
1387570
1387646
+
Val
GAC
-
¡û
>A171002336
CP002792
Euryarchaeota
Methanothermococcus okinawensis IH1 [CP002792]
1497092
1497166
+
Val
GAC
-
¡û
>A171004485
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1335136
1335060
-
Val
GAC
-
¡û
>WENV180275334
OBHT01008898
[OBHT] metagenome; hydrothermal vent
51
127
+
Val
GAC
[ENA]
¢þ
>WENV180287173
OBIK01000551
[OBIK] hydrothermal vent metagenome; sea water
1486
1410
-
Val
GAC
[ENA]
¢þ
>WENV180287911
OBIL01012982
[OBIL] metagenome; hydrothermal vent
272
196
-
Val
GAC
[ENA]
¢þ
>WENV180317021
OBKJ01006727
[OBKJ] metagenome; hydrothermal vent
111
187
+
Val
GAC
[ENA]
¢þ
>WENV180332513
OBLD01029751
[OBLD] metagenome; water
230
306
+
Val
GAC
[ENA]
¢þ
>WENV180582463
OCMO01103078
[OCMO] metagenome; diffuse fluid
127
53
-
Val
GAC
[ENA]
¢þ
>WENV181206312
OFAT01004089
[OFAT] metagenome; hydrothermal vent
169
95
-
Val
GAC
[ENA]
¢þ
>WENV181206624
OFAW01000649
[OFAW] metagenome; hydrothermal vent
3358
3282
-
Val
GAC
[ENA]
¢þ
>WENV181207527
OFAZ01001708
[OFAZ] metagenome; hydrothermal vent
1260
1336
+
Val
GAC
[ENA]
¢þ
>WENV181207852
OFBA01000983
[OFBA] metagenome; hydrothermal vent
2645
2721
+
Val
GAC
[ENA]
¢þ
>WENV181208359
OFBB01005326
[OFBB] metagenome; hydrothermal vent
1053
1129
+
Val
GAC
[ENA]
¢þ
>WENV181208738
OFBC01003216
[OFBC] metagenome; hydrothermal vent
418
494
+
Val
GAC
[ENA]
¢þ
>WENV181213555
OFBV01008393
[OFBV] metagenome; hydrothermal vent
894
818
-
Val
GAC
[ENA]
¢þ
>WENV181213956
OFBW01004009
[OFBW] metagenome; hydrothermal vent
1097
1021
-
Val
GAC
[ENA]
¢þ
>WENV181214646
OFBY01005143
[OFBY] metagenome; hydrothermal vent
510
586
+
Val
GAC
[ENA]
¢þ
>WENV181215068
OFBZ01002361
[OFBZ] metagenome; hydrothermal vent
1472
1548
+
Val
GAC
[ENA]
¢þ
>WENV181215745
OFCA01011745
[OFCA] metagenome; hydrothermal vent
672
596
-
Val
GAC
[ENA]
¢þ
>WENV181216246
OFCB01011534
[OFCB] metagenome; hydrothermal vent
39
115
+
Val
GAC
[ENA]
¢þ
>WENV181223920
OFDD01003427
[OFDD] metagenome; hydrothermal vent
1343
1267
-
Val
GAC
[ENA]
¢þ
>WENV181224736
OFDG01002659
[OFDG] metagenome; hydrothermal vent
573
649
+
Val
GAC
[ENA]
¢þ
>WENV181225402
OFDI01000929
[OFDI] metagenome; hydrothermal vent
1377
1301
-
Val
GAC
[ENA]
¢þ
>At0952
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
403044
402968
-
Val
GAC
[Ensembl]
¡û
>W1910067428
BFAX01000003
Euryarchaeota
Methanofervidicoccus abyssi HHB [BFAX]
84660
84734
+
Val
GAC
[ENA]
¡û
>W1610001119
ACQW01000010
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
49853
49929
+
Val
GAC
[ENA]
¡û
>W1610001161
ACQY01000026
Euryarchaeota
Methanocaldococcus infernus ME [ACQY]
3120
3044
-
Val
GAC
[ENA]
¡û
>W1610001551
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
488998
488922
-
Val
GAC
[ENA]
¡û
>W1610001625
ADCA01000001
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
194421
194497
+
Val
GAC
[ENA]
¡û
>W1610002146
AEDA01000015
Euryarchaeota
Methanothermococcus okinawensis IH1 [AEDA]
33603
33677
+
Val
GAC
[ENA]
¡û
>W1610004282
AGJL01000003
Euryarchaeota
Methanotorris formicicus Mc-S-70 [AGJL]
22325
22401
+
Val
GAC
[ENA]
¡û
>W1610018891
AQXV01000046
Euryarchaeota
Methanothermococcus thermolithotrophicus DSM 2095 [AQXV]
45676
45752
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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