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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.151984 (9 seq.)
>A171000874
CP001696
Euryarchaeota
Methanocaldococcus fervens AG86 [CP001696]
876051
875975
-
Thr
GGT
-
¡û
>A171001004
CP001787
Euryarchaeota
Methanocaldococcus vulcanius M7 [CP001787]
144883
144957
+
Thr
GGT
-
¡û
>A171001264
CP001901
Euryarchaeota
Methanocaldococcus sp. FS406-22 [CP001901]
1307234
1307310
+
Thr
GGT
-
¡û
>A171004475
CP009149
Euryarchaeota
Methanocaldococcus bathoardescens JH146 [CP009149]
1063899
1063975
+
Thr
GGT
-
¡û
>WENV181215157
OFBZ01005583
[OFBZ] metagenome; hydrothermal vent
675
751
+
Thr
GGT
[ENA]
¢þ
>At0954
L77117
Euryarchaeota
Methanocaldococcus jannaschii DSM 2661 [L77117]
763842
763766
-
Thr
GGT
[Ensembl]
¡û
>W1610001127
ACQW01000017
Euryarchaeota
Methanocaldococcus fervens AG86 [ACQW]
17289
17213
-
Thr
GGT
[ENA]
¡û
>W1610001552
ACUW01000001
Euryarchaeota
Methanocaldococcus vulcanius M7 [ACUW]
328285
328209
-
Thr
GGT
[ENA]
¡û
>W1610001651
ADCA01000008
Euryarchaeota
Methanocaldococcus sp. FS406-22 [ADCA] FS406-22 [ADCA]
35778
35702
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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