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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152114 (22 seq.)
>W1711088351
LSYU01000055
Gammaproteobacteria
Marichromatium gracile [LSYU]
61761
61685
-
Pro
CGG
[ENA]
¡û
>W141055221
AONC01000026
Gammaproteobacteria
Imhoffiella purpurea AK35 [AONC]
33465
33541
+
Pro
CGG
[ENA]
¡û
>WENV181367854
OFQD01002108
[OFQD] freshwater metagenome; Freshwater Lake
394
470
+
Pro
CGG
[ENA]
¢þ
>WENV170536506
CEWP01199210
[CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
209
135
-
Pro
CGG
[ENA]
¢þ
>WENV170626411
FUWD013221612
[FUWD] metagenome; unknown
336
260
-
Pro
CGG
[ENA]
¢þ
>WENV170898316
MDTD01124098
[MDTD] marine metagenome; seawater
1794
1868
+
Pro
CGG
[ENA]
¢þ
>WENV170923625
MDTG01052477
[MDTG] marine metagenome; seawater
4221
4295
+
Pro
CGG
[ENA]
¢þ
>C181044128
CP020370
Gammaproteobacteria
Candidatus Thiodictyon syntrophicum Cad16T [CP020370]
5737754
5737830
+
Pro
CGG
-
¡û
>W09133818
ACQQ01000003
Gammaproteobacteria
Allochromatium vinosum DSM 180 [ACQQ]
133790
133714
-
Pro
CGG
[ENA]
¡û
>W1910728831
MGXV01000086
Gammaproteobacteria
Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_37_14 [MGXV]
79298
79223
-
Pro
CGG
[ENA]
¡û
>C151016288
CP007031
Gammaproteobacteria
Marichromatium purpuratum 984 [CP007031]
710494
710418
-
Pro
CGG
[Ensembl]
¡û
>C10101210
CP001896
Gammaproteobacteria
Allochromatium vinosum DSM 180 [CP001896]
2467495
2467571
+
Pro
CGG
[Ensembl]
¡û
>W11176046
AFWT01000005
Gammaproteobacteria
Thiorhodococcus drewsii AZ1 [AFWT]
138023
138099
+
Pro
CGG
[ENA]
¡û
>W11176130
AFWU01000019
Gammaproteobacteria
Marichromatium purpuratum 984 [AFWU]
11720
11796
+
Pro
CGG
[ENA]
¡û
>W11176150
AFWV01000002
Gammaproteobacteria
Thiocapsa marina 5811 [AFWV]
461983
461907
-
Pro
CGG
[ENA]
¡û
>W11178612
AGFC01000014
Gammaproteobacteria
Thiocystis violascens DSM 198 [AGFC]
6830
6754
-
Pro
CGG
[ENA]
¡û
>C121006992
CP003154
Gammaproteobacteria
Thiocystis violascens DSM 198 [CP003154]
2794166
2794242
+
Pro
CGG
[Ensembl]
¡û
>W1610085787
CVPF01000160
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
20353
20277
-
Pro
CGG
[ENA]
¡û
>C131001783
CP003051
Gammaproteobacteria
Thioflavicoccus mobilis 8321 [CP003051]
1434860
1434784
-
Pro
CGG
[Ensembl]
¡û
>W1610922890
LSYU01000055
Gammaproteobacteria
Marichromatium gracile [LSYU]
61761
61685
-
Pro
CGG
[ENA]
¡û
>W1710090376
CVPF01000160
Gammaproteobacteria
Thiocapsa sp. KS1 [CVPF]
20353
20277
-
Pro
CGG
[ENA]
¡û
>W1710529467
FNNZ01000011
Gammaproteobacteria
Thiocapsa roseopersicina [FNNZ]
175777
175701
-
Pro
CGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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