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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.152463 (14 seq.)
>C017954
BX908798
Chlamydiota
Candidatus Protochlamydia amoebophila UWE25 [BX908798]
2236328
2236251
-
Glu
TTC
[Ensembl]
¡û
>W141229829
BASK01001095
Chlamydiota
Neochlamydia sp. S13 [BASK]
4303
4229
-
Glu
TTC
[ENA]
¡û
>W141229872
BASL01000613
Chlamydiota
Candidatus Protochlamydia sp. R18 [BASL]
6869
6791
-
Glu
TTC
[ENA]
¡û
>W1910725550
MGLY01000092
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9 [MGLY]
2621
2699
+
Glu
TTC
[ENA]
¡û
>W2010858977
MGLY01000092
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9 [MGLY]
2621
2699
+
Glu
TTC
[ENA]
¡û
>SRA1041372
SRR035091.234354
454 Sequencing (SRP001812)
23
97
+
Glu
TTC
[SRA]
>SRA1047272
SRR035093.499610
454 Sequencing (SRP001814)
153
77
-
Glu
TTC
[SRA]
>W2012063208
VJOT01000003
Chlamydiota
Neochlamydia sp. AcF84 [VJOT]
5017
4943
-
Glu
TTC
[ENA]
¡û
>W2110429315
JAEMUB010000040
Chlamydiota
Candidatus Protochlamydia amoebophila AcF82 [JAEMUB]
65372
65449
+
Glu
TTC
[ENA]
¡û
>W2110429351
JAEMUC010000061
Chlamydiota
Neochlamydia sp. AcF95 [JAEMUC]
17906
17832
-
Glu
TTC
[ENA]
¡û
>W2110429401
JAEMUE010000014
Chlamydiota
Neochlamydia sp. AcF65 [JAEMUE]
32158
32232
+
Glu
TTC
[ENA]
¡û
>W1511358810
JRXI01000196
Chlamydiota
Neochlamydia sp. TUME1 [JRXI]
14735
14809
+
Glu
TTC
[ENA]
¡û
>W1511360613
JSAN01000133
Chlamydiota
Candidatus Protochlamydia amoebophila amoebophila EI2 [JSAN]
45884
45806
-
Glu
TTC
[ENA]
¡û
>W1511364931
JSDQ01000028
Chlamydiota
Neochlamydia sp. EPS4 [JSDQ]
47497
47423
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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