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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153041 (23 seq.)
>W1711076485
LSLJ01000001
Bacillota
Sporomusa sphaeroides DSM 2875 [LSLJ]
2015929
2016005
+
Pro
GGG
[ENA]
¡û
>W131162516
AQYY01000003
Bacillota
Dehalobacter sp. FTH1 [AQYY]
204789
204865
+
Pro
GGG
[ENA]
¡û
>WENV181889284
OGXN01000060
[OGXN] human gut metagenome; faeces
3105
3029
-
Pro
GGG
[ENA]
¢þ
>C08005377
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
388241
388317
+
Pro
GGG
[Ensembl]
¡û
>C08005415
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
2287094
2287170
+
Pro
GGG
[Ensembl]
¡û
>C08005448
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
2799796
2799723
-
Pro
GGG
[Ensembl]
¡û
>WENV183745810
POVV01000973
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
12922
12998
+
Pro
GGG
[ENA]
¢þ
>WENV183745912
POVV01001838
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
51
127
+
Pro
GGG
[ENA]
¢þ
>WENV183746097
POVV01007914
[POVV] bioreactor metagenome; anaerobic chemostat enrichment culture, galacturonate as sole carbon source, pH 8; inoculated with
51
127
+
Pro
GGG
[ENA]
¢þ
>WENV170563382
CZCB01016478
[CZCB] anaerobic digester metagenome; anaerobic digester
5238
5162
-
Pro
GGG
[ENA]
¢þ
>WENV170658814
JUEG02000760
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
57561
57637
+
Pro
GGG
[ENA]
¢þ
>C191002384
AP018449
Bacillota
Methylomusa anaerophila MMFC1 [AP018449]
4007289
4007365
+
Pro
GGG
-
¡û
>W1910200199
FCOW01000001
Bacillota
Sporomusa sphaeroides DSM 2875 [FCOW]
101472
101396
-
Pro
GGG
[ENA]
¡û
>W1910639119
LSLL01000055
Bacillota
Sporomusa acidovorans DSM 3132 [LSLL]
336762
336686
-
Pro
GGG
[ENA]
¡û
>W1910647175
LXPC01000015
Bacillota
Dehalobacter sp. MCB1 [LXPC]
89431
89507
+
Pro
GGG
[ENA]
¡û
>W1911608681
PNXX01000002
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
86951
87027
+
Pro
GGG
[ENA]
¡û
>W1911613562
POSF01000018
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
99351
99427
+
Pro
GGG
[ENA]
¡û
>C151016357
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
1942547
1942471
-
Pro
GGG
[Ensembl]
¡û
>C10113270
CP002028
Bacillota
Thermincola potens JR [CP002028]
2182496
2182420
-
Pro
GGG
[Ensembl]
¡û
>W1511644729
LDXJ01000059
Bacillota
Peptococcaceae bacterium CEB3 [LDXJ]
17409
17485
+
Pro
GGG
[ENA]
¡û
>W11161308
AFGF01000041
Bacillota
Acetonema longum DSM 6540 [AFGF]
473
397
-
Pro
GGG
[ENA]
¡û
>W11181399
AGJB01000004
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
222182
222258
+
Pro
GGG
[ENA]
¡û
>W1710513826
FNAM01000001
Bacillota
Sporomusa acidovorans [FNAM]
84029
84105
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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