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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153083 (90 seq.)
>W1710926742
LOEL01000002
Bacteroidota
Porphyromonas gingivalis [LOEL]
736
812
+
Arg
TCT
[ENA]
¡û
>W131111443
APMB01000180
Bacteroidota
Porphyromonas gingivalis JCVI SC001 [APMB]
69617
69693
+
Arg
TCT
[ENA]
¡û
>W131175806
ARJN01000057
Bacteroidota
Porphyromonas gulae DSM 15663 [ARJN]
85977
85903
-
Arg
TCT
[ENA]
¡û
>W1712084860
NHRU01000002
Bacteroidota
Porphyromonas gingivalis [NHRU]
290100
290176
+
Arg
TCT
[ENA]
¡û
>C016366
AE015924
Bacteroidota
Porphyromonas gingivalis W83 [AE015924]
1624760
1624836
+
Arg
TCT
[Ensembl]
¡û
>WENV180004016
FLRQ01006579
[FLRQ] metagenome; saliva
459
534
+
Arg
TCT
[ENA]
¢þ
>WENV180004207
FLRR01010090
[FLRR] metagenome; saliva
251
176
-
Arg
TCT
[ENA]
¢þ
>WENV180005855
FLRX01010230
[FLRX] metagenome; saliva
444
369
-
Arg
TCT
[ENA]
¢þ
>WENV180007049
FLRZ01088441
[FLRZ] metagenome; saliva
287
362
+
Arg
TCT
[ENA]
¢þ
>WENV180731673
ODGW01005764
[ODGW] human metagenome; G_DNA_Supragingival plaque
362
437
+
Arg
TCT
[ENA]
¢þ
>W141074449
ASYL01000100
Bacteroidota
Porphyromonas gingivalis SJD2 [ASYL]
8500
8576
+
Arg
TCT
[ENA]
¡û
>W141145649
AWUU01000146
Bacteroidota
Porphyromonas gingivalis F0568 [AWUU]
22897
22821
-
Arg
TCT
[ENA]
¡û
>W141145659
AWUV01000014
Bacteroidota
Porphyromonas gingivalis F0569 [AWUV]
17670
17746
+
Arg
TCT
[ENA]
¡û
>W141145706
AWUW01000031
Bacteroidota
Porphyromonas gingivalis F0570 [AWUW]
9347
9423
+
Arg
TCT
[ENA]
¡û
>W141145953
AWVC01000078
Bacteroidota
Porphyromonas gingivalis F0185 [AWVC]
9455
9531
+
Arg
TCT
[ENA]
¡û
>W141145989
AWVD01000074
Bacteroidota
Porphyromonas gingivalis F0566 [AWVD]
17604
17680
+
Arg
TCT
[ENA]
¡û
>W141146058
AWVE01000144
Bacteroidota
Porphyromonas gingivalis W4087 [AWVE]
58212
58288
+
Arg
TCT
[ENA]
¡û
>WENV181979665
OHAF01002199
[OHAF] human gut metagenome; faeces
12702
12627
-
Arg
TCT
[ENA]
¢þ
>WENV182004704
OHBE01000369
[OHBE] human gut metagenome; faeces
34607
34532
-
Arg
TCT
[ENA]
¢þ
>WENV182881595
OKSA01017865
[OKSA] human gut metagenome; faeces
1708
1633
-
Arg
TCT
[ENA]
¢þ
>C08007311
AP009380
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [AP009380]
614304
614228
-
Arg
TCT
[Ensembl]
¡û
>WENV183507931
OMGZ01000989
[OMGZ] human oral metagenome; human oral
772
847
+
Arg
TCT
[ENA]
¢þ
>WENV183507979
OMHA01000181
[OMHA] human oral metagenome; human oral
162
237
+
Arg
TCT
[ENA]
¢þ
>WENV183510903
OMHT01000213
[OMHT] human oral metagenome; human oral
3241
3166
-
Arg
TCT
[ENA]
¢þ
>C181102071
CP024591
Bacteroidota
Porphyromonas gingivalis KCOM 2802 [CP024591]
722083
722158
+
Arg
TCT
-
¡û
>C181102129
CP024592
Bacteroidota
Porphyromonas gingivalis KCOM 2803 [CP024592]
1721724
1721799
+
Arg
TCT
-
¡û
>C181102185
CP024593
Bacteroidota
Porphyromonas gingivalis KCOM 2804 [CP024593]
1858542
1858467
-
Arg
TCT
-
¡û
>C181102246
CP024594
Bacteroidota
Porphyromonas gingivalis KCOM 2805 [CP024594]
773362
773287
-
Arg
TCT
-
¡û
>C181102274
CP024595
Bacteroidota
Porphyromonas gingivalis KCOM 3001 [CP024595]
1527555
1527630
+
Arg
TCT
-
¡û
>C181102325
CP024596
Bacteroidota
Porphyromonas gingivalis KCOM 3131 [CP024596]
1781015
1781090
+
Arg
TCT
-
¡û
>C181102382
CP024597
Bacteroidota
Porphyromonas gingivalis KCOM 2796 [CP024597]
1583931
1583856
-
Arg
TCT
-
¡û
>C181102409
CP024598
Bacteroidota
Porphyromonas gingivalis KCOM 2798 [CP024598]
342939
343014
+
Arg
TCT
-
¡û
>C181102460
CP024599
Bacteroidota
Porphyromonas gingivalis KCOM 2800 [CP024599]
505418
505493
+
Arg
TCT
-
¡û
>C181102529
CP024600
Bacteroidota
Porphyromonas gingivalis KCOM 2801 [CP024600]
2066653
2066728
+
Arg
TCT
-
¡û
>C181102573
CP024601
Bacteroidota
Porphyromonas gingivalis KCOM 2799 [CP024601]
2251260
2251185
-
Arg
TCT
-
¡û
>C181123615
CP025930
Bacteroidota
Porphyromonas gingivalis ATCC 33277 [CP025930]
615359
615284
-
Arg
TCT
-
¡û
>C181123638
CP025931
Bacteroidota
Porphyromonas gingivalis TDC 60 [CP025931]
1363320
1363395
+
Arg
TCT
-
¡û
>C181123688
CP025932
Bacteroidota
Porphyromonas gingivalis W83 [CP025932]
1624759
1624834
+
Arg
TCT
-
¡û
>W1910371001
FUFB01000003
Bacteroidota
Porphyromonas gingivalis 3_3 [FUFB]
10461
10536
+
Arg
TCT
[ENA]
¡û
>W1910371070
FUFC01000025
Bacteroidota
Porphyromonas gingivalis 3A1 [FUFC]
71515
71440
-
Arg
TCT
[ENA]
¡û
>W1910371122
FUFD01000063
Bacteroidota
Porphyromonas gingivalis 7BTORR [FUFD]
61306
61231
-
Arg
TCT
[ENA]
¡û
>W1910371129
FUFE01000003
Bacteroidota
Porphyromonas gingivalis 11A [FUFE]
363
438
+
Arg
TCT
[ENA]
¡û
>W1910371180
FUFF01000006
Bacteroidota
Porphyromonas gingivalis A7A1_28 [FUFF]
22914
22839
-
Arg
TCT
[ENA]
¡û
>W1910371235
FUFG01000025
Bacteroidota
Porphyromonas gingivalis 84_3 [FUFG]
22935
23010
+
Arg
TCT
[ENA]
¡û
>W1910371288
FUFH01000050
Bacteroidota
Porphyromonas gingivalis ATCC 49417 [FUFH]
54922
54997
+
Arg
TCT
[ENA]
¡û
>W1910371324
FUFI01000021
Bacteroidota
Porphyromonas gingivalis SU60 [FUFI]
2957
2882
-
Arg
TCT
[ENA]
¡û
>W1910371376
FUFJ01000053
Bacteroidota
Porphyromonas gingivalis AFR5B1 [FUFJ]
24128
24053
-
Arg
TCT
[ENA]
¡û
>W1910372565
FUGF01000030
Bacteroidota
Porphyromonas gingivalis 15_9 [FUGF]
9329
9404
+
Arg
TCT
[ENA]
¡û
>W1910372634
FUGG01000063
Bacteroidota
Porphyromonas gingivalis 13_1 [FUGG]
34808
34883
+
Arg
TCT
[ENA]
¡û
>W1911247354
NSLL01000001
Bacteroidota
Porphyromonas gingivalis WW5127 [NSLL]
11702
11777
+
Arg
TCT
[ENA]
¡û
>W1911247407
NSLM01000004
Bacteroidota
Porphyromonas gingivalis WW5019 [NSLM]
58485
58560
+
Arg
TCT
[ENA]
¡û
>W1911247469
NSLN01000024
Bacteroidota
Porphyromonas gingivalis WW3039 [NSLN]
30839
30764
-
Arg
TCT
[ENA]
¡û
>W1911247500
NSLO01000009
Bacteroidota
Porphyromonas gingivalis WW3102 [NSLO]
23243
23318
+
Arg
TCT
[ENA]
¡û
>W1911247554
NSLP01000030
Bacteroidota
Porphyromonas gingivalis WW3040 [NSLP]
27542
27467
-
Arg
TCT
[ENA]
¡û
>W1911247589
NSLQ01000012
Bacteroidota
Porphyromonas gingivalis WW2952 [NSLQ]
25749
25824
+
Arg
TCT
[ENA]
¡û
>W1911247622
NSLR01000005
Bacteroidota
Porphyromonas gingivalis WW2931 [NSLR]
51095
51020
-
Arg
TCT
[ENA]
¡û
>W1911247667
NSLS01000004
Bacteroidota
Porphyromonas gingivalis WW2903 [NSLS]
18557
18632
+
Arg
TCT
[ENA]
¡û
>W1911247731
NSLT01000035
Bacteroidota
Porphyromonas gingivalis WW2885 [NSLT]
14789
14714
-
Arg
TCT
[ENA]
¡û
>W1911247767
NSLU01000035
Bacteroidota
Porphyromonas gingivalis WW2881 [NSLU]
18605
18530
-
Arg
TCT
[ENA]
¡û
>W1911247813
NSLV01000021
Bacteroidota
Porphyromonas gingivalis WW2866 [NSLV]
7435
7510
+
Arg
TCT
[ENA]
¡û
>W1911247844
NSLW01000004
Bacteroidota
Porphyromonas gingivalis WW2842 [NSLW]
62261
62336
+
Arg
TCT
[ENA]
¡û
>W1911247892
NSLX01000009
Bacteroidota
Porphyromonas gingivalis WW2096 [NSLX]
18023
18098
+
Arg
TCT
[ENA]
¡û
>W1911709107
QPGS01000003
Bacteroidota
Porphyromonas gingivalis 381OKJP [QPGS]
51543
51468
-
Arg
TCT
[ENA]
¡û
>W1810573724
QEKY01000008
Bacteroidota
Porphyromonas loveana DSM 28520 [QEKY]
19148
19223
+
Arg
TCT
[ENA]
¡û
>C151089069
CP011995
Bacteroidota
Porphyromonas gingivalis A7436 [CP011995]
514870
514794
-
Arg
TCT
-
¡û
>C151089116
CP011996
Bacteroidota
Porphyromonas gingivalis AJW4 [CP011996]
527897
527821
-
Arg
TCT
-
¡û
>C11117331
AP012203
Bacteroidota
Porphyromonas gingivalis TDC60 [AP012203]
795565
795489
-
Arg
TCT
[Ensembl]
¡û
>W1511328351
JQJE01000014
Bacteroidota
Porphyromonas gulae OH3161B [JQJE]
87367
87293
-
Arg
TCT
[ENA]
¡û
>W1511336134
JQZY01000015
Bacteroidota
Porphyromonas sp. COT-052 OH4946 [JQZY]
12051
11977
-
Arg
TCT
[ENA]
¡û
>W1511336374
JRAE01000071
Bacteroidota
Porphyromonas gulae COT-052_OH2199 [JRAE]
889
963
+
Arg
TCT
[ENA]
¡û
>W1511336400
JRAF01000034
Bacteroidota
Porphyromonas gulae COT-052 OH3498 [JRAF]
2393
2467
+
Arg
TCT
[ENA]
¡û
>W1511336444
JRAG01000018
Bacteroidota
Porphyromonas gulae COT-052 OH1355 [JRAG]
68923
68997
+
Arg
TCT
[ENA]
¡û
>W1511336553
JRAI01000063
Bacteroidota
Porphyromonas gulae COT-052 OH1451 [JRAI]
12000
11926
-
Arg
TCT
[ENA]
¡û
>W1511336578
JRAJ01000010
Bacteroidota
Porphyromonas gulae COT-052 OH2179 [JRAJ]
50692
50766
+
Arg
TCT
[ENA]
¡û
>W1511336634
JRAK01000118
Bacteroidota
Porphyromonas gulae COT-052 OH3439 [JRAK]
295
369
+
Arg
TCT
[ENA]
¡û
>W1511336672
JRAL01000026
Bacteroidota
Porphyromonas gulae COT-052 OH4119 [JRAL]
53891
53965
+
Arg
TCT
[ENA]
¡û
>W1511336848
JRAQ01000035
Bacteroidota
Porphyromonas gulae COT-052 OH3471 [JRAQ]
85616
85542
-
Arg
TCT
[ENA]
¡û
>W1511336928
JRAT01000009
Bacteroidota
Porphyromonas gulae COT-052 OH3856 [JRAT]
74032
74106
+
Arg
TCT
[ENA]
¡û
>W1511343928
JRFD01000026
Bacteroidota
Porphyromonas gulae COT-052 OH2857 [JRFD]
186901
186827
-
Arg
TCT
[ENA]
¡û
>C161018159
CP007756
Bacteroidota
Porphyromonas gingivalis HG66 [CP007756]
813572
813496
-
Arg
TCT
[Ensembl]
¡û
>C161046956
CP012889
Bacteroidota
Porphyromonas gingivalis 381 [CP012889]
614072
613996
-
Arg
TCT
-
¡û
>C161051801
CP013131
Bacteroidota
Porphyromonas gingivalis A7A1-28 [CP013131]
599772
599696
-
Arg
TCT
-
¡û
>W121073568
AJZS01000069
Bacteroidota
Porphyromonas gingivalis W50 [AJZS]
85181
85105
-
Arg
TCT
[ENA]
¡û
>W1610060533
BCBV01000036
Bacteroidota
Porphyromonas gingivalis [BCBV]
67151
67227
+
Arg
TCT
[ENA]
¡û
>W1610784235
LOEL01000002
Bacteroidota
Porphyromonas gingivalis [LOEL]
736
812
+
Arg
TCT
[ENA]
¡û
>W1710017882
ASYM01000062
Bacteroidota
Porphyromonas gingivalis SJD4 [ASYM]
12671
12595
-
Arg
TCT
[ENA]
¡û
>W1710017933
ASYN01000124
Bacteroidota
Porphyromonas gingivalis SJD5 [ASYN]
12639
12563
-
Arg
TCT
[ENA]
¡û
>W1710017990
ASYO01000110
Bacteroidota
Porphyromonas gingivalis SJD11 [ASYO]
3415
3339
-
Arg
TCT
[ENA]
¡û
>W1710018003
ASYP01000035
Bacteroidota
Porphyromonas gingivalis SJD12 [ASYP]
23070
22994
-
Arg
TCT
[ENA]
¡û
>W1710057788
BCBV01000036
Bacteroidota
Porphyromonas gingivalis [BCBV]
67151
67227
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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