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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.153743 (25 seq.)
>W131181661
ARPG01000002
Bacteroidota
Rudanella lutea DSM 19387 [ARPG]
4011906
4011993
+
Tyr
GTA
[ENA]
¡û
>W1711503994
MKUD01000029
Bacteroidota
Spirosoma sp. 48-14 [MKUD]
40368
40283
-
Tyr
GTA
[ENA]
¡û
>W1711606580
MORL01000005
Bacteroidota
Arsenicibacter rosenii [MORL]
179844
179759
-
Tyr
GTA
[ENA]
¡û
>W1711769469
MVEC01000019
Bacteroidota
Spirosoma sp. 209 [MVEC]
79342
79427
+
Tyr
GTA
[ENA]
¡û
>C171030737
CP014263
Bacteroidota
Spirosoma montaniterrae DY10 [CP014263]
5003421
5003504
+
Tyr
GTA
-
¡û
>C171037564
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
871238
871153
-
Tyr
GTA
-
¡û
>C171104390
CP020104
Bacteroidota
Spirosoma aerolatum KACC 17939 [CP020104]
6621179
6621264
+
Tyr
GTA
-
¡û
>C171104458
CP020105
Bacteroidota
Spirosoma rigui KCTC 12531 [CP020105]
672856
672771
-
Tyr
GTA
-
¡û
>W131169822
ARFA01000026
Bacteroidota
Spirosoma panaciterrae DSM 21099 [ARFA]
86053
86138
+
Tyr
GTA
[ENA]
¡û
>W131169901
ARFC01000010
Bacteroidota
Spirosoma luteum DSM 19990 [ARFC]
88623
88538
-
Tyr
GTA
[ENA]
¡û
>W131169918
ARFD01000008
Bacteroidota
Spirosoma spitsbergense DSM 19989 [ARFD]
102600
102685
+
Tyr
GTA
[ENA]
¡û
>W141242800
CAIT01000010
Bacteroidota
Fibrisoma limi BUZ 3 [CAIT]
49017
49102
+
Tyr
GTA
[ENA]
¡û
>W09109914
ABUR01000006
Bacteroidota
Spirosoma linguale DSM 74 [ABUR]
123368
123283
-
Tyr
GTA
[ENA]
¡û
>W1911497276
OCNH01000002
Bacteroidota
Spirosoma fluviale DSM 29961 [OCNH]
833353
833439
+
Tyr
GTA
[ENA]
¡û
>W1911726797
QTJY01000004
Bacteroidota
Larkinella soli MIMbqt9 [QTJY]
272509
272594
+
Tyr
GTA
[ENA]
¡û
>W1911766812
QXED01000004
Bacteroidota
Fibrisoma montanum HYT19 [QXED]
91056
91139
+
Tyr
GTA
[ENA]
¡û
>W1810364359
PVTE01000002
Bacteroidota
Spirosoma oryzae DSM 28354 [PVTE]
29155
29070
-
Tyr
GTA
[ENA]
¡û
>W1810692066
QLII01000001
Bacteroidota
Spirosoma telluris HMF3257 [QLII]
4335528
4335613
+
Tyr
GTA
[ENA]
¡û
>W1810745134
QOWE01000009
Bacteroidota
Larkinella punicea zzj9 [QOWE]
193335
193250
-
Tyr
GTA
[ENA]
¡û
>SRA1014276
SRR023845.68048
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
131
46
-
Tyr
GTA
[SRA]
>SRA1014739
SRR023845.291170
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
130
45
-
Tyr
GTA
[SRA]
>C151068623
CP010429
Bacteroidota
Spirosoma radiotolerans DG5A [CP010429]
5969887
5969802
-
Tyr
GTA
[Ensembl]
¡û
>C10111782
CP001769
Bacteroidota
Spirosoma linguale DSM 74 [CP001769]
5434899
5434814
-
Tyr
GTA
[Ensembl]
¡û
>C161104962
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
1355496
1355581
+
Tyr
GTA
[Ensembl]
¡û
>W1710558207
FOLQ01000016
Bacteroidota
Spirosoma endophyticum [FOLQ]
112925
113010
+
Tyr
GTA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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