This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155082 (128 seq.)
>W1711107079
LTSL01000003
Fusobacteriota
Fusobacterium sp. HMSC064B11 [LTSL]
68060
67984
-
Arg
TCG
[ENA]
¡û
>W1712084808
NHRT01000001
Fusobacteriota
Fusobacterium polymorphum subsp. polymorphum [NHRT]
5721
5797
+
Arg
TCG
[ENA]
¡û
>w017376
AARG01000012
Fusobacteriota
Fusobacterium polymorphum subsp. polymorphum ATCC 10953 [AARG]
276821
276743
-
Arg
TCG
[ENA]
¡û
>WENV180697971
ODDE01015504
[ODDE] human metagenome; G_DNA_Supragingival plaque
1086
1010
-
Arg
TCG
[ENA]
¢þ
>WENV180717643
ODGE01000312
[ODGE] human metagenome; G_DNA_Buccal mucosa
10304
10228
-
Arg
TCG
[ENA]
¢þ
>WENV180718044
ODGE01041364
[ODGE] human metagenome; G_DNA_Buccal mucosa
183
259
+
Arg
TCG
[ENA]
¢þ
>WENV180720125
ODGJ01017590
[ODGJ] human metagenome; G_DNA_Tongue dorsum
275
199
-
Arg
TCG
[ENA]
¢þ
>WENV180720813
ODGJ01180851
[ODGJ] human metagenome; G_DNA_Tongue dorsum
166
90
-
Arg
TCG
[ENA]
¢þ
>WENV180722363
ODGM01000177
[ODGM] human metagenome; G_DNA_Palatine Tonsils
8126
8202
+
Arg
TCG
[ENA]
¢þ
>WENV180728050
ODGU01021965
[ODGU] human metagenome; G_DNA_Supragingival plaque
2299
2375
+
Arg
TCG
[ENA]
¢þ
>WENV180732857
ODGY01005917
[ODGY] human metagenome; G_DNA_Supragingival plaque
1260
1184
-
Arg
TCG
[ENA]
¢þ
>WENV180736226
ODHB01010968
[ODHB] human metagenome; G_DNA_Supragingival plaque
1306
1382
+
Arg
TCG
[ENA]
¢þ
>WENV180739019
ODHD01002799
[ODHD] human metagenome; G_DNA_Supragingival plaque
982
1058
+
Arg
TCG
[ENA]
¢þ
>WENV180758403
ODHW01033574
[ODHW] human metagenome; G_DNA_Tongue dorsum
183
259
+
Arg
TCG
[ENA]
¢þ
>WENV180759150
ODHY01000965
[ODHY] human metagenome; G_DNA_Buccal mucosa
6926
7002
+
Arg
TCG
[ENA]
¢þ
>WENV180763817
ODIA01006116
[ODIA] human metagenome; G_DNA_Tongue dorsum
2756
2832
+
Arg
TCG
[ENA]
¢þ
>WENV180765065
ODIB01016564
[ODIB] human metagenome; G_DNA_Supragingival plaque
181
257
+
Arg
TCG
[ENA]
¢þ
>WENV180768911
ODIG01023349
[ODIG] human metagenome; G_DNA_Tongue dorsum
1766
1690
-
Arg
TCG
[ENA]
¢þ
>WENV180778798
ODIM01103223
[ODIM] human metagenome; G_DNA_Supragingival plaque
204
128
-
Arg
TCG
[ENA]
¢þ
>WENV180788716
ODIS01102327
[ODIS] human metagenome; G_DNA_Supragingival plaque
188
112
-
Arg
TCG
[ENA]
¢þ
>WENV180788843
ODIS01131596
[ODIS] human metagenome; G_DNA_Supragingival plaque
83
7
-
Arg
TCG
[ENA]
¢þ
>WENV180793845
ODIW01112175
[ODIW] human metagenome; G_DNA_Tongue dorsum
132
56
-
Arg
TCG
[ENA]
¢þ
>WENV180800755
ODJD01000770
[ODJD] human metagenome; G_DNA_Supragingival plaque
5679
5755
+
Arg
TCG
[ENA]
¢þ
>WENV180804522
ODJG01004763
[ODJG] human metagenome; G_DNA_Supragingival plaque
4502
4578
+
Arg
TCG
[ENA]
¢þ
>W141079020
ATKF01000111
Fusobacteriota
Fusobacterium hwasookii ChDC F174 [ATKF]
6413
6489
+
Arg
TCG
[ENA]
¡û
>W141079036
ATKG01000041
Fusobacteriota
Fusobacterium hwasookii ChDC F300 [ATKG]
6413
6489
+
Arg
TCG
[ENA]
¡û
>W141079078
ATKH01000169
Fusobacteriota
Fusobacterium hwasookii ChDC F206 [ATKH]
333
257
-
Arg
TCG
[ENA]
¡û
>WENV180813866
ODJO01003335
[ODJO] human metagenome; G_DNA_Supragingival plaque
2908
2832
-
Arg
TCG
[ENA]
¢þ
>WENV180816485
ODJP01017543
[ODJP] human metagenome; G_DNA_Tongue dorsum
118
42
-
Arg
TCG
[ENA]
¢þ
>WENV180820660
ODJR01019521
[ODJR] human metagenome; G_DNA_Tongue dorsum
673
597
-
Arg
TCG
[ENA]
¢þ
>WENV180820878
ODJR01085905
[ODJR] human metagenome; G_DNA_Tongue dorsum
98
22
-
Arg
TCG
[ENA]
¢þ
>WENV180822973
ODJW01001441
[ODJW] human metagenome; G_DNA_Supragingival plaque
5359
5435
+
Arg
TCG
[ENA]
¢þ
>WENV180824879
ODJX01080522
[ODJX] human metagenome; G_DNA_Supragingival plaque
162
238
+
Arg
TCG
[ENA]
¢þ
>WENV180833075
ODKC01012943
[ODKC] human metagenome; G_DNA_Supragingival plaque
1587
1663
+
Arg
TCG
[ENA]
¢þ
>WENV180835450
ODKE01003535
[ODKE] human metagenome; G_DNA_Supragingival plaque
5683
5759
+
Arg
TCG
[ENA]
¢þ
>WENV180842037
ODKK01080327
[ODKK] human metagenome; G_DNA_Buccal mucosa
127
51
-
Arg
TCG
[ENA]
¢þ
>WENV180842834
ODKN01000027
[ODKN] human metagenome; G_DNA_Supragingival plaque
105388
105312
-
Arg
TCG
[ENA]
¢þ
>WENV180845379
ODKT01000253
[ODKT] human metagenome; G_DNA_Supragingival plaque
38216
38140
-
Arg
TCG
[ENA]
¢þ
>WENV180847183
ODKT01049168
[ODKT] human metagenome; G_DNA_Supragingival plaque
346
422
+
Arg
TCG
[ENA]
¢þ
>WENV180852659
ODKW01003236
[ODKW] human metagenome; G_DNA_Tongue dorsum
134
58
-
Arg
TCG
[ENA]
¢þ
>WENV180856871
ODKZ01125327
[ODKZ] human metagenome; G_DNA_Tongue dorsum
87
163
+
Arg
TCG
[ENA]
¢þ
>WENV180857294
ODLA01032233
[ODLA] human metagenome; G_DNA_Buccal mucosa
101
25
-
Arg
TCG
[ENA]
¢þ
>WENV180860187
ODLD01028570
[ODLD] human metagenome; G_DNA_Supragingival plaque
1000
924
-
Arg
TCG
[ENA]
¢þ
>WENV180882086
ODMB01008795
[ODMB] human metagenome; G_DNA_Buccal mucosa
136
212
+
Arg
TCG
[ENA]
¢þ
>WENV180884059
ODMC01035552
[ODMC] human metagenome; G_DNA_Tongue dorsum
757
833
+
Arg
TCG
[ENA]
¢þ
>WENV180922494
ODTJ01004869
[ODTJ] human metagenome; G_DNA_Supragingival plaque
311
235
-
Arg
TCG
[ENA]
¢þ
>WENV180924927
ODTK01024399
[ODTK] human metagenome; G_DNA_Supragingival plaque
1131
1207
+
Arg
TCG
[ENA]
¢þ
>WENV180924962
ODTK01027689
[ODTK] human metagenome; G_DNA_Supragingival plaque
893
817
-
Arg
TCG
[ENA]
¢þ
>WENV180927212
ODTM01000066
[ODTM] human metagenome; G_DNA_Supragingival plaque
343
419
+
Arg
TCG
[ENA]
¢þ
>WENV180927834
ODTM01004844
[ODTM] human metagenome; G_DNA_Supragingival plaque
3045
2969
-
Arg
TCG
[ENA]
¢þ
>WENV180937348
ODTV01087939
[ODTV] human metagenome; G_DNA_Buccal mucosa
27
103
+
Arg
TCG
[ENA]
¢þ
>WENV180938853
ODTX01008175
[ODTX] human metagenome; G_DNA_Supragingival plaque
263
187
-
Arg
TCG
[ENA]
¢þ
>WENV180945391
ODUC01138116
[ODUC] human metagenome; G_DNA_Supragingival plaque
269
193
-
Arg
TCG
[ENA]
¢þ
>WENV180977566
ODUZ01001904
[ODUZ] human metagenome; G_DNA_Tongue dorsum
6623
6699
+
Arg
TCG
[ENA]
¢þ
>WENV180979577
ODVC01000337
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
29485
29409
-
Arg
TCG
[ENA]
¢þ
>WENV180981402
ODVE01020185
[ODVE] human metagenome; G_DNA_Supragingival plaque
478
402
-
Arg
TCG
[ENA]
¢þ
>WENV180987012
ODVK01003199
[ODVK] human metagenome; G_DNA_Supragingival plaque
3736
3812
+
Arg
TCG
[ENA]
¢þ
>WENV180990275
ODVN01000753
[ODVN] human metagenome; G_DNA_Tongue dorsum
20338
20262
-
Arg
TCG
[ENA]
¢þ
>WENV180999392
ODVT01016837
[ODVT] human metagenome; G_DNA_Buccal mucosa
82
6
-
Arg
TCG
[ENA]
¢þ
>WENV181003847
ODVX01041424
[ODVX] human metagenome; G_DNA_Supragingival plaque
674
750
+
Arg
TCG
[ENA]
¢þ
>WENV181005944
ODWA01000242
[ODWA] human metagenome; G_DNA_Buccal mucosa
16514
16438
-
Arg
TCG
[ENA]
¢þ
>WENV181006345
ODWA01011807
[ODWA] human metagenome; G_DNA_Buccal mucosa
1219
1295
+
Arg
TCG
[ENA]
¢þ
>WENV181009215
ODWE01040234
[ODWE] human metagenome; G_DNA_Supragingival plaque
303
227
-
Arg
TCG
[ENA]
¢þ
>WENV181009233
ODWE01042160
[ODWE] human metagenome; G_DNA_Supragingival plaque
489
413
-
Arg
TCG
[ENA]
¢þ
>WENV181009493
ODWE01081658
[ODWE] human metagenome; G_DNA_Supragingival plaque
78
2
-
Arg
TCG
[ENA]
¢þ
>WENV181010385
ODWH01004879
[ODWH] human metagenome; G_DNA_Buccal mucosa
955
879
-
Arg
TCG
[ENA]
¢þ
>WENV181033978
ODXN01047550
[ODXN] human metagenome; G_DNA_Tongue dorsum
138
62
-
Arg
TCG
[ENA]
¢þ
>WENV181041993
ODXS01100961
[ODXS] human metagenome; G_DNA_Tongue dorsum
214
290
+
Arg
TCG
[ENA]
¢þ
>WENV181042509
ODXU01000457
[ODXU] human metagenome; G_DNA_Buccal mucosa
6588
6512
-
Arg
TCG
[ENA]
¢þ
>WENV181050267
ODYD01011038
[ODYD] human metagenome; G_DNA_Supragingival plaque
263
187
-
Arg
TCG
[ENA]
¢þ
>WENV181064003
ODYP01007634
[ODYP] human metagenome; G_DNA_Supragingival plaque
3657
3733
+
Arg
TCG
[ENA]
¢þ
>WENV181066729
ODZI01001284
[ODZI] human metagenome; G_DNA_Supragingival plaque
5156
5232
+
Arg
TCG
[ENA]
¢þ
>WENV181070500
OEAE01002386
[OEAE] human metagenome; G_DNA_Supragingival plaque
6459
6535
+
Arg
TCG
[ENA]
¢þ
>WENV181076646
OEAP01009541
[OEAP] human metagenome; G_DNA_Supragingival plaque
3928
4004
+
Arg
TCG
[ENA]
¢þ
>WENV181083041
OEAV01002054
[OEAV] human metagenome; G_DNA_Supragingival plaque
2018
2094
+
Arg
TCG
[ENA]
¢þ
>WENV181084403
OEAV01199768
[OEAV] human metagenome; G_DNA_Supragingival plaque
65
141
+
Arg
TCG
[ENA]
¢þ
>WENV181087088
OEAY01010835
[OEAY] human metagenome; G_DNA_Tongue dorsum
1606
1530
-
Arg
TCG
[ENA]
¢þ
>WENV181090340
OEBC01000236
[OEBC] human metagenome; G_DNA_Supragingival plaque
27291
27215
-
Arg
TCG
[ENA]
¢þ
>WENV181106129
OEED01043202
[OEED] human metagenome; G_DNA_Tongue dorsum
391
315
-
Arg
TCG
[ENA]
¢þ
>WENV181106868
OEEI01000509
[OEEI] human metagenome; G_DNA_Supragingival plaque
16128
16052
-
Arg
TCG
[ENA]
¢þ
>WENV181121871
OEFL01026073
[OEFL] human metagenome; G_DNA_Supragingival plaque
101
177
+
Arg
TCG
[ENA]
¢þ
>WENV181125421
OEFT01098139
[OEFT] human metagenome; G_DNA_Tongue dorsum
91
15
-
Arg
TCG
[ENA]
¢þ
>WENV181129961
OEFY01000135
[OEFY] human metagenome; G_DNA_Throat
7698
7774
+
Arg
TCG
[ENA]
¢þ
>WENV181136811
OEGI01070775
[OEGI] human metagenome; G_DNA_Supragingival plaque
285
209
-
Arg
TCG
[ENA]
¢þ
>WENV181137788
OEGJ01026011
[OEGJ] human metagenome; G_DNA_Supragingival plaque
105
181
+
Arg
TCG
[ENA]
¢þ
>WENV181141283
OEGT01002640
[OEGT] human metagenome; G_DNA_Throat
4674
4750
+
Arg
TCG
[ENA]
¢þ
>WENV181146081
OEHQ01000866
[OEHQ] human metagenome; G_DNA_Supragingival plaque
14046
13970
-
Arg
TCG
[ENA]
¢þ
>WENV181146257
OEHQ01002350
[OEHQ] human metagenome; G_DNA_Supragingival plaque
5680
5756
+
Arg
TCG
[ENA]
¢þ
>WENV181153520
OEIA01112118
[OEIA] human metagenome; G_DNA_Supragingival plaque
79
155
+
Arg
TCG
[ENA]
¢þ
>WENV181155842
OEIE01000240
[OEIE] human metagenome; G_DNA_Supragingival plaque
17895
17819
-
Arg
TCG
[ENA]
¢þ
>WENV181158861
OEIH01013289
[OEIH] human metagenome; G_DNA_Supragingival plaque
266
190
-
Arg
TCG
[ENA]
¢þ
>WENV181160678
OEIK01023605
[OEIK] human metagenome; G_DNA_Supragingival plaque
1137
1213
+
Arg
TCG
[ENA]
¢þ
>WENV181180044
OEJT01057677
[OEJT] human metagenome; G_DNA_Supragingival plaque
266
190
-
Arg
TCG
[ENA]
¢þ
>WENV181181361
OEJU01026448
[OEJU] human metagenome; G_DNA_Supragingival plaque
508
584
+
Arg
TCG
[ENA]
¢þ
>WENV181182621
OEJV01022435
[OEJV] human metagenome; G_DNA_Supragingival plaque
60
136
+
Arg
TCG
[ENA]
¢þ
>WENV181581510
OGKA01013389
[OGKA] metagenome; Human gut stool
122
46
-
Arg
TCG
[ENA]
¢þ
>W141157889
AXNV01000002
Fusobacteriota
Fusobacterium nucleatum CTI-6 [AXNV]
201079
201003
-
Arg
TCG
[ENA]
¡û
>WENV181867921
OGWW01004761
[OGWW] human gut metagenome; faeces
822
746
-
Arg
TCG
[ENA]
¢þ
>WENV181873843
OGXA01002162
[OGXA] human gut metagenome; faeces
4816
4740
-
Arg
TCG
[ENA]
¢þ
>WENV181953968
OGZI01078034
[OGZI] human gut metagenome; faeces
457
533
+
Arg
TCG
[ENA]
¢þ
>W141284863
JANA01000053
Fusobacteriota
Fusobacterium sp. OBRC1 [JANA]
174588
174512
-
Arg
TCG
[ENA]
¡û
>W141286762
JAOZ01000004
Fusobacteriota
Fusobacterium nucleatum 13_3C [JAOZ]
6813
6889
+
Arg
TCG
[ENA]
¡û
>W141288816
JAQC01000002
Fusobacteriota
Fusobacterium sp. CM22 [JAQC]
63014
62938
-
Arg
TCG
[ENA]
¡û
>WENV182967333
OKWZ01001264
[OKWZ] human gut metagenome; stool
448
524
+
Arg
TCG
[ENA]
¢þ
>WENV183252810
OLRI01006305
[OLRI] human gut metagenome; faeces
1604
1528
-
Arg
TCG
[ENA]
¢þ
>C181058879
CP022123
Fusobacteriota
Fusobacterium polymorphum KCOM 1275 [CP022123]
1088794
1088718
-
Arg
TCG
-
¡û
>C181104009
CP024699
Fusobacteriota
Fusobacterium pseudoperiodonticum KCOM 1261 [CP024699]
704802
704878
+
Arg
TCG
-
¡û
>W09126673
ACJY01000070
Fusobacteriota
Fusobacterium periodonticum ATCC 33693 [ACJY]
31270
31194
-
Arg
TCG
[ENA]
¡û
>W1910928826
NIRJ01000001
Fusobacteriota
Fusobacterium polymorphum [NIRJ]
1163974
1164050
+
Arg
TCG
[ENA]
¡û
>W1910928891
NIRK01000001
Fusobacteriota
Fusobacterium polymorphum [NIRK]
463559
463483
-
Arg
TCG
[ENA]
¡û
>W1910928917
NIRL01000001
Fusobacteriota
Fusobacterium polymorphum [NIRL]
417021
416945
-
Arg
TCG
[ENA]
¡û
>W1910928981
NIRM01000009
Fusobacteriota
Fusobacterium polymorphum [NIRM]
4407
4331
-
Arg
TCG
[ENA]
¡û
>W1910928983
NIRN01000001
Fusobacteriota
Fusobacterium polymorphum [NIRN]
389135
389211
+
Arg
TCG
[ENA]
¡û
>W1910929032
NIRO01000004
Fusobacteriota
Fusobacterium polymorphum [NIRO]
99256
99180
-
Arg
TCG
[ENA]
¡û
>W1910929119
NIRP01000003
Fusobacteriota
Fusobacterium polymorphum [NIRP]
138093
138169
+
Arg
TCG
[ENA]
¡û
>W1910929165
NIRQ01000001
Fusobacteriota
Fusobacterium polymorphum [NIRQ]
133820
133744
-
Arg
TCG
[ENA]
¡û
>W1911431748
NXMD01000089
Fusobacteriota
Fusobacterium nucleatum 12230 MIT 2016 [NXMD]
6613
6689
+
Arg
TCG
[ENA]
¡û
>W1810084257
PEQW01000001
Fusobacteriota
Fusobacterium polymorphum KCOM 1265 [PEQW]
2309761
2309837
+
Arg
TCG
[ENA]
¡û
>W1810679088
QKOC01000002
Fusobacteriota
Fusobacterium nucleatum 12230 [QKOC]
8478
8554
+
Arg
TCG
[ENA]
¡û
>C161051444
CP013121
Fusobacteriota
Fusobacterium polymorphum ChDC F306 [CP013121]
108072
108148
+
Arg
TCG
-
¡û
>C161055315
CP013328
Fusobacteriota
Fusobacterium polymorphum ChDC F319 [CP013328]
1684226
1684150
-
Arg
TCG
-
¡û
>C161055372
CP013331
Fusobacteriota
Fusobacterium hwasookii ChDC F174 [CP013331]
1154283
1154359
+
Arg
TCG
[Ensembl]
¡û
>C161055428
CP013334
Fusobacteriota
Fusobacterium hwasookii ChDC F300 [CP013334]
1455500
1455424
-
Arg
TCG
[Ensembl]
¡û
>C161055462
CP013336
Fusobacteriota
Fusobacterium hwasookii ChDC F206 [CP013336]
1135346
1135422
+
Arg
TCG
-
¡û
>C161106080
LN831027
Fusobacteriota
Fusobacterium polymorphum NCTC10562 [LN831027]
1925839
1925763
-
Arg
TCG
-
¡û
>W121001356
ADDB01000011
Fusobacteriota
Fusobacterium polymorphum subsp. polymorphum F0401 [ADDB]
118935
118859
-
Arg
TCG
[ENA]
¡û
>W121119263
ALVD01000001
Fusobacteriota
Fusobacterium hwasookii ChDC F128 [ALVD]
455638
455562
-
Arg
TCG
[ENA]
¡û
>W121007415
AGAD01000070
Fusobacteriota
Fusobacterium sp. oral taxon 370 oral taxon 370 str. F0437 [AGAD]
4967
4891
-
Arg
TCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK