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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.155350 (109 seq.)
>W1711075766
LSKR01003921
Actinomycetota
Corynebacterium durum [LSKR]
145
221
+
Met
CAT
[ENA]
¡û
>W1711511671
MLCQ01000006
Actinomycetota
Corynebacterium sp. NML140438 [MLCQ]
27430
27506
+
Met
CAT
[ENA]
¡û
>W1711511754
MLCR01000015
Actinomycetota
Corynebacterium sp. NML120713 [MLCR]
28015
27939
-
Met
CAT
[ENA]
¡û
>W131164525
ARAV01000012
Actinomycetota
Corynebacterium lubricantis DSM 45231 [ARAV]
16995
16919
-
Met
CAT
[ENA]
¡û
>W131215754
ATVG01000008
Actinomycetota
Corynebacterium massiliense DSM 45435 [ATVG]
97692
97616
-
Met
CAT
[ENA]
¡û
>C171064717
CP017639
Actinomycetota
Corynebacterium sp. NML98-0116 [CP017639]
701249
701325
+
Met
CAT
-
¡û
>W141042453
AMEM01000023
Actinomycetota
Corynebacterium durum F0235 [AMEM]
67784
67860
+
Met
CAT
[ENA]
¡û
>WENV180503256
OCAM01006790
[OCAM] human gut metagenome; faeces
1868
1792
-
Ile2
CAT
[ENA]
¢þ
>WENV180698035
ODDE01022856
[ODDE] human metagenome; G_DNA_Supragingival plaque
721
797
+
Ile2
CAT
[ENA]
¢þ
>WENV180728361
ODGU01042803
[ODGU] human metagenome; G_DNA_Supragingival plaque
187
263
+
Ile2
CAT
[ENA]
¢þ
>WENV180731340
ODGW01000106
[ODGW] human metagenome; G_DNA_Supragingival plaque
2327
2251
-
Ile2
CAT
[ENA]
¢þ
>WENV180732771
ODGY01003659
[ODGY] human metagenome; G_DNA_Supragingival plaque
125
49
-
Ile2
CAT
[ENA]
¢þ
>WENV180733505
ODGZ01000135
[ODGZ] human metagenome; G_DNA_Supragingival plaque
24409
24485
+
Ile2
CAT
[ENA]
¢þ
>WENV180735941
ODHB01002029
[ODHB] human metagenome; G_DNA_Supragingival plaque
4372
4448
+
Ile2
CAT
[ENA]
¢þ
>WENV180739146
ODHD01008966
[ODHD] human metagenome; G_DNA_Supragingival plaque
1249
1173
-
Ile2
CAT
[ENA]
¢þ
>WENV180751399
ODHS01048960
[ODHS] human metagenome; G_DNA_Supragingival plaque
125
49
-
Ile2
CAT
[ENA]
¢þ
>WENV180755043
ODHU01008992
[ODHU] human metagenome; G_DNA_Supragingival plaque
185
261
+
Ile2
CAT
[ENA]
¢þ
>WENV180778119
ODIM01000660
[ODIM] human metagenome; G_DNA_Supragingival plaque
11061
11137
+
Ile2
CAT
[ENA]
¢þ
>WENV180781956
ODIP01009858
[ODIP] human metagenome; G_DNA_Supragingival plaque
1744
1668
-
Ile2
CAT
[ENA]
¢þ
>WENV180800887
ODJD01002532
[ODJD] human metagenome; G_DNA_Supragingival plaque
4535
4611
+
Ile2
CAT
[ENA]
¢þ
>WENV180804335
ODJG01001734
[ODJG] human metagenome; G_DNA_Supragingival plaque
1296
1372
+
Ile2
CAT
[ENA]
¢þ
>WENV180814702
ODJO01038058
[ODJO] human metagenome; G_DNA_Supragingival plaque
783
707
-
Ile2
CAT
[ENA]
¢þ
>WENV180822394
ODJT01000572
[ODJT] human metagenome; G_DNA_Supragingival plaque
11292
11368
+
Ile2
CAT
[ENA]
¢þ
>WENV180834110
ODKD01003053
[ODKD] human metagenome; G_DNA_Supragingival plaque
2318
2394
+
Ile2
CAT
[ENA]
¢þ
>WENV180888255
ODMN01000312
[ODMN] human metagenome; G_DNA_Supragingival plaque
7068
6992
-
Ile2
CAT
[ENA]
¢þ
>WENV180891687
ODMQ01005080
[ODMQ] human metagenome; G_DNA_Supragingival plaque
281
357
+
Ile2
CAT
[ENA]
¢þ
>WENV180922609
ODTJ01006818
[ODTJ] human metagenome; G_DNA_Supragingival plaque
2432
2356
-
Ile2
CAT
[ENA]
¢þ
>WENV180927725
ODTM01002906
[ODTM] human metagenome; G_DNA_Supragingival plaque
6010
5934
-
Ile2
CAT
[ENA]
¢þ
>WENV180933785
ODTR01002587
[ODTR] human metagenome; G_DNA_Supragingival plaque
4816
4892
+
Ile2
CAT
[ENA]
¢þ
>WENV180934724
ODTS01001557
[ODTS] human metagenome; G_DNA_Subgingival plaque
361
285
-
Ile2
CAT
[ENA]
¢þ
>WENV180937631
ODTX01000011
[ODTX] human metagenome; G_DNA_Supragingival plaque
26135
26059
-
Ile2
CAT
[ENA]
¢þ
>WENV180943124
ODUC01000001
[ODUC] human metagenome; G_DNA_Supragingival plaque
312233
312157
-
Ile2
CAT
[ENA]
¢þ
>WENV180958471
ODUL01005774
[ODUL] human metagenome; G_DNA_Supragingival plaque
2446
2522
+
Ile2
CAT
[ENA]
¢þ
>WENV180964743
ODUO01015656
[ODUO] human metagenome; G_DNA_Supragingival plaque
1034
958
-
Ile2
CAT
[ENA]
¢þ
>WENV180973431
ODUW01005372
[ODUW] human metagenome; G_DNA_Supragingival plaque
571
647
+
Ile2
CAT
[ENA]
¢þ
>WENV180981767
ODVE01058835
[ODVE] human metagenome; G_DNA_Supragingival plaque
649
725
+
Ile2
CAT
[ENA]
¢þ
>WENV180982742
ODVF01000477
[ODVF] human metagenome; G_DNA_Supragingival plaque
21095
21171
+
Ile2
CAT
[ENA]
¢þ
>WENV180987321
ODVK01013921
[ODVK] human metagenome; G_DNA_Supragingival plaque
391
315
-
Ile2
CAT
[ENA]
¢þ
>WENV180999804
ODVT01072030
[ODVT] human metagenome; G_DNA_Buccal mucosa
381
305
-
Ile2
CAT
[ENA]
¢þ
>WENV181002720
ODVX01001360
[ODVX] human metagenome; G_DNA_Supragingival plaque
1595
1519
-
Ile2
CAT
[ENA]
¢þ
>WENV181007853
ODWE01000879
[ODWE] human metagenome; G_DNA_Supragingival plaque
1668
1592
-
Ile2
CAT
[ENA]
¢þ
>WENV181012840
ODWK01042079
[ODWK] human metagenome; G_DNA_Supragingival plaque
185
261
+
Ile2
CAT
[ENA]
¢þ
>WENV181020372
ODWU01150394
[ODWU] human metagenome; G_DNA_Supragingival plaque
99
23
-
Ile2
CAT
[ENA]
¢þ
>WENV181029669
ODXF01001742
[ODXF] human metagenome; G_DNA_Supragingival plaque
4961
4885
-
Ile2
CAT
[ENA]
¢þ
>WENV181050687
ODYD01042766
[ODYD] human metagenome; G_DNA_Supragingival plaque
823
899
+
Ile2
CAT
[ENA]
¢þ
>WENV181063303
ODYP01000381
[ODYP] human metagenome; G_DNA_Supragingival plaque
19349
19425
+
Ile2
CAT
[ENA]
¢þ
>WENV181066958
ODZI01003982
[ODZI] human metagenome; G_DNA_Supragingival plaque
5326
5250
-
Ile2
CAT
[ENA]
¢þ
>WENV181076781
OEAP01013524
[OEAP] human metagenome; G_DNA_Supragingival plaque
2890
2814
-
Ile2
CAT
[ENA]
¢þ
>WENV181082195
OEAT01000035
[OEAT] human metagenome; G_DNA_Supragingival plaque
22159
22235
+
Ile2
CAT
[ENA]
¢þ
>WENV181084334
OEAV01149968
[OEAV] human metagenome; G_DNA_Supragingival plaque
219
295
+
Ile2
CAT
[ENA]
¢þ
>WENV181090407
OEBC01000412
[OEBC] human metagenome; G_DNA_Supragingival plaque
3093
3017
-
Ile2
CAT
[ENA]
¢þ
>WENV181121883
OEFL01027175
[OEFL] human metagenome; G_DNA_Supragingival plaque
475
399
-
Ile2
CAT
[ENA]
¢þ
>WENV181124153
OEFQ01016392
[OEFQ] human metagenome; G_DNA_Supragingival plaque
456
380
-
Ile2
CAT
[ENA]
¢þ
>WENV181137962
OEGJ01055840
[OEGJ] human metagenome; G_DNA_Supragingival plaque
313
237
-
Ile2
CAT
[ENA]
¢þ
>WENV181143209
OEHM01000250
[OEHM] human metagenome; G_DNA_Supragingival plaque
24706
24782
+
Ile2
CAT
[ENA]
¢þ
>WENV181146042
OEHQ01000618
[OEHQ] human metagenome; G_DNA_Supragingival plaque
357
281
-
Ile2
CAT
[ENA]
¢þ
>WENV181152074
OEIA01000067
[OEIA] human metagenome; G_DNA_Supragingival plaque
61486
61410
-
Ile2
CAT
[ENA]
¢þ
>WENV181158740
OEIH01008410
[OEIH] human metagenome; G_DNA_Supragingival plaque
1464
1388
-
Ile2
CAT
[ENA]
¢þ
>WENV181179087
OEJT01001280
[OEJT] human metagenome; G_DNA_Supragingival plaque
1798
1722
-
Ile2
CAT
[ENA]
¢þ
>WENV181180595
OEJU01000315
[OEJU] human metagenome; G_DNA_Supragingival plaque
30745
30669
-
Ile2
CAT
[ENA]
¢þ
>WENV181181713
OEJV01000099
[OEJV] human metagenome; G_DNA_Supragingival plaque
11098
11022
-
Ile2
CAT
[ENA]
¢þ
>WENV181212323
OFBO01000395
[OFBO] metagenome; hydrothermal vent
660
586
-
Ile2
CAT
[ENA]
¢þ
>W141259177
CBYN010000083
Actinomycetota
Corynebacterium jeddahense JCB [CBYN]
1205
1129
-
Met
CAT
[ENA]
¡û
>WENV182641203
OJLE01031177
[OJLE] metagenome; surface
120
194
+
Ile2
CAT
[ENA]
¢þ
>WENV182642216
OJLL01006409
[OJLL] metagenome; surface
1078
1154
+
Ile2
CAT
[ENA]
¢þ
>WENV182643091
OJLS01000587
[OJLS] metagenome; surface
440
366
-
Ile2
CAT
[ENA]
¢þ
>WENV182645901
OJLZ01008555
[OJLZ] metagenome; surface
189
115
-
Ile2
CAT
[ENA]
¢þ
>W141452876
JFCF01000042
Actinomycetota
Corynebacterium jeikeium [JFCF]
728
654
-
Met
CAT
[ENA]
¡û
>W141452910
JFCG01000032
Actinomycetota
Corynebacterium jeikeium [JFCG]
24816
24890
+
Met
CAT
[ENA]
¡û
>W141452960
JFCH01000046
Actinomycetota
Corynebacterium jeikeium [JFCH]
13418
13492
+
Met
CAT
[ENA]
¡û
>W141453466
JFCR01000019
Actinomycetota
Corynebacterium jeikeium [JFCR]
5073
4999
-
Met
CAT
[ENA]
¡û
>C181039049
CP019688
Actinomycetota
Corynebacterium glaucum DSM 30827 [CP019688]
1889051
1888977
-
Met
CAT
-
¡û
>C181144768
CP027001
Actinomycetota
Corynebacterium camporealensis CIP 105508 [CP027001]
1772112
1772038
-
Met
CAT
-
¡û
>C181225941
LT906467
Actinomycetota
Corynebacterium imitans NCTC13015 [LT906467]
1922983
1922909
-
Met
CAT
-
¡û
>W09127938
ACLJ01000006
Actinomycetota
Corynebacterium genitalium ATCC 33030 [ACLJ]
40354
40428
+
Met
CAT
[ENA]
¡û
>W1910183458
BJNT01000007
Actinomycetota
Corynebacterium variabile NBRC 15286 [BJNT]
48948
49023
+
Met
CAT
[ENA]
¡û
>W1911179011
NQMQ01000002
Actinomycetota
Corynebacterium hadale NBT06-6 [NQMQ]
229138
229212
+
Met
CAT
[ENA]
¡û
>W1911243600
NSGP01000011
Actinomycetota
Corynebacterium hadale NML92-0415 [NSGP]
7516
7590
+
Met
CAT
[ENA]
¡û
>W1911596577
PNHG01000029
Actinomycetota
Corynebacterium tuscaniense UMB0792 [PNHG]
4143
4069
-
Met
CAT
[ENA]
¡û
>W1911621444
PQNE01000037
Actinomycetota
Corynebacterium bovis WCM5 [PQNE]
4261
4187
-
Met
CAT
[ENA]
¡û
>W1911621501
PQNF01000046
Actinomycetota
Corynebacterium bovis WCM4 [PQNF]
10439
10365
-
Met
CAT
[ENA]
¡û
>W1911621548
PQNG01000038
Actinomycetota
Corynebacterium bovis WCM3 - SMALL [PQNG]
4209
4283
+
Met
CAT
[ENA]
¡û
>W1911621612
PQNH01000098
Actinomycetota
Corynebacterium bovis WCM3 - LARGE [PQNH]
4221
4295
+
Met
CAT
[ENA]
¡û
>W1911621651
PQNI01000037
Actinomycetota
Corynebacterium bovis WCM1 [PQNI]
4230
4304
+
Met
CAT
[ENA]
¡û
>W1911621718
PQNJ01000175
Actinomycetota
Corynebacterium bovis MI 82-1021 [PQNJ]
517
443
-
Met
CAT
[ENA]
¡û
>W1911621742
PQNK01000002
Actinomycetota
Corynebacterium bovis F6900 [PQNK]
168623
168697
+
Met
CAT
[ENA]
¡û
>W1911621805
PQNL01000075
Actinomycetota
Corynebacterium bovis CUAMC1 - SMALL [PQNL]
3305
3231
-
Met
CAT
[ENA]
¡û
>W1911621852
PQNM01000127
Actinomycetota
Corynebacterium bovis CUAMC1 - LARGE [PQNM]
4946
5020
+
Met
CAT
[ENA]
¡û
>W1911621899
PQNN01000017
Actinomycetota
Corynebacterium bovis 17-0240 - SMALL [PQNN]
11816
11742
-
Met
CAT
[ENA]
¡û
>W1911621947
PQNO01000039
Actinomycetota
Corynebacterium bovis 17-0240 - LARGE [PQNO]
11787
11713
-
Met
CAT
[ENA]
¡û
>W1911622007
PQNP01000014
Actinomycetota
Corynebacterium bovis 16-3465 [PQNP]
11831
11757
-
Met
CAT
[ENA]
¡û
>W1911622052
PQNQ01000019
Actinomycetota
Corynebacterium bovis 16-2004 [PQNQ]
40760
40834
+
Met
CAT
[ENA]
¡û
>W1911622088
PQNR01000023
Actinomycetota
Corynebacterium bovis 16-1683 - SMALL [PQNR]
4218
4292
+
Met
CAT
[ENA]
¡û
>W1911622141
PQNS01000025
Actinomycetota
Corynebacterium bovis 16-1683 - LARGE [PQNS]
4695
4769
+
Met
CAT
[ENA]
¡û
>W1911622192
PQNT01000004
Actinomycetota
Corynebacterium bovis 13-1426 [PQNT]
99709
99635
-
Met
CAT
[ENA]
¡û
>W1911622257
PQNU01000011
Actinomycetota
Corynebacterium bovis 12-5346 [PQNU]
51102
51028
-
Met
CAT
[ENA]
¡û
>W1911622335
PQNW01000003
Actinomycetota
Corynebacterium bovis 4828 [PQNW]
211562
211636
+
Met
CAT
[ENA]
¡û
>W1911622391
PQNX01000002
Actinomycetota
Corynebacterium bovis 4826 [PQNX]
305115
305189
+
Met
CAT
[ENA]
¡û
>W1911770943
QXJK01000004
Actinomycetota
Corynebacterium falsenii FN1-14 [QXJK]
25677
25751
+
Met
CAT
[ENA]
¡û
>W1810187380
PKHN01000013
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
7291
7217
-
Met
CAT
[ENA]
¡û
>W1810187381
PKHN01000013
Actinomycetota
Corynebacterium riegelii UMB0243 [PKHN]
327
253
-
Met
CAT
[ENA]
¡û
>C11106256
CP002857
Actinomycetota
Corynebacterium resistens DSM 45100 [CP002857]
874664
874740
+
Met
CAT
[Ensembl]
¡û
>C11106697
CP002917
Actinomycetota
Corynebacterium variabile DSM 44702 [CP002917]
1244111
1244035
-
Met
CAT
[Ensembl]
¡û
>W1511459386
JVKJ01000001
Actinomycetota
Corynebacterium falsenii 355_CFAL [JVKJ]
257256
257332
+
Met
CAT
[ENA]
¡û
>W11141092
AENJ01000204
Actinomycetota
Corynebacterium bovis DSM 20582 [AENJ]
5554
5628
+
Met
CAT
[ENA]
¡û
>C161041033
CP012342
Actinomycetota
Corynebacterium riegelii PUDD_83A45 [CP012342]
199122
199196
+
Met
CAT
[Ensembl]
¡û
>C131005412
CP003697
Actinomycetota
Corynebacterium halotolerans YIM 70093 = DSM 44683 [CP003697]
2258409
2258335
-
Met
CAT
[Ensembl]
¡û
>C131005361
CP003696
Actinomycetota
Corynebacterium terpenotabidum Y-11 [CP003696]
998603
998527
-
Met
CAT
[Ensembl]
¡û
>W1610915071
LSKR01003921
Actinomycetota
Corynebacterium durum [LSKR]
145
221
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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