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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.156958 (110 seq.)
>W141003704
ADWW01000001
Bacillota
Bacillus methanolicus MGA3 [ADWW]
405747
405823
+
Ile
GAT
[ENA]
¡û
>W141003723
ADWW01000001
Bacillota
Bacillus methanolicus MGA3 [ADWW]
471635
471711
+
Ile
GAT
[ENA]
¡û
>WENV180202529
OBAG01000236
[OBAG] human gut metagenome; human gut
39742
39818
+
Ile
GAT
[ENA]
¢þ
>WENV180337917
OBLG01195281
[OBLG] human gut metagenome; human gut
173
97
-
Ile
GAT
[ENA]
¢þ
>WENV180605098
OCPS01101136
[OCPS] human gut metagenome; human gut
137
61
-
Ile
GAT
[ENA]
¢þ
>WENV180679581
OCVV012309270
[OCVV] gut metagenome; gut
124
48
-
Ile
GAT
[ENA]
¢þ
>WENV180679582
OCVV012309270
[OCVV] gut metagenome; gut
124
48
-
Ile
GAT
[ENA]
¢þ
>WENV180717255
ODGC01000164
[ODGC] human metagenome; G_DNA_Vaginal introitus
922
847
-
Ile
GAT
[ENA]
¢þ
>WENV180717288
ODGC01001577
[ODGC] human metagenome; G_DNA_Vaginal introitus
247
174
-
Ile
GAT
[ENA]
¢þ
>WENV180717876
ODGE01006756
[ODGE] human metagenome; G_DNA_Buccal mucosa
560
636
+
Ile
GAT
[ENA]
¢þ
>WENV180893992
ODMR01026224
[ODMR] human metagenome; G_DNA_Stool
1075
999
-
Ile
GAT
[ENA]
¢þ
>WENV180946365
ODUD01052403
[ODUD] human metagenome; G_DNA_Tongue dorsum
80
156
+
Ile
GAT
[ENA]
¢þ
>WENV181053328
ODYI01000111
[ODYI] human metagenome; G_DNA_Stool
110545
110621
+
Ile
GAT
[ENA]
¢þ
>WENV181098582
OECI01000115
[OECI] human metagenome; G_DNA_Stool
19604
19528
-
Ile
GAT
[ENA]
¢þ
>WENV181120120
OEFJ01005482
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
122
198
+
Ile
GAT
[ENA]
¢þ
>WENV181247315
OFFK01015954
[OFFK] mouse gut metagenome; faeces
829
756
-
Ile
GAT
[ENA]
¢þ
>WENV181271472
OFGF01041336
[OFGF] mouse gut metagenome; faeces
864
937
+
Ile
GAT
[ENA]
¢þ
>WENV181272249
OFGG01005159
[OFGG] mouse gut metagenome; faeces
1298
1371
+
Ile
GAT
[ENA]
¢þ
>WENV181436479
OGDF01018782
[OGDF] human gut metagenome; human gut
141
65
-
Ile
GAT
[ENA]
¢þ
>WENV181478783
OGFG01000120
[OGFG] metagenome; Human gut stool
7151
7227
+
Ile
GAT
[ENA]
¢þ
>WENV181618098
OGMB01007462
[OGMB] metagenome; Human gut stool
126
50
-
Ile
GAT
[ENA]
¢þ
>WENV181662137
OGOG01017482
[OGOG] human gut metagenome; faeces
107
183
+
Ile
GAT
[ENA]
¢þ
>WENV181730004
OGQB01051821
[OGQB] human gut metagenome; faeces
549
473
-
Ile
GAT
[ENA]
¢þ
>WENV181788308
OGRO01000859
[OGRO] human gut metagenome; faeces
25547
25471
-
Ile
GAT
[ENA]
¢þ
>WENV181833682
OGUQ01005706
[OGUQ] metagenome; Human gut stool
1465
1389
-
Ile
GAT
[ENA]
¢þ
>WENV181912692
OGYE01000542
[OGYE] human gut metagenome; faeces
9704
9780
+
Ile
GAT
[ENA]
¢þ
>WENV181943883
OGYZ01072903
[OGYZ] human gut metagenome; faeces
78
2
-
Ile
GAT
[ENA]
¢þ
>WENV182012417
OHBM01024400
[OHBM] human gut metagenome; faeces
140
64
-
Ile
GAT
[ENA]
¢þ
>WENV182016120
OHBU01001846
[OHBU] human gut metagenome; feces
4247
4171
-
Ile
GAT
[ENA]
¢þ
>WENV182062110
OHEU01016985
[OHEU] human gut metagenome; feces
127
203
+
Ile
GAT
[ENA]
¢þ
>WENV182066844
OHFC01016143
[OHFC] human gut metagenome; feces
873
797
-
Ile
GAT
[ENA]
¢þ
>WENV182111855
OHIS01035035
[OHIS] human gut metagenome; feces
98
174
+
Ile
GAT
[ENA]
¢þ
>WENV182124762
OHJR01011339
[OHJR] human gut metagenome; feces
909
985
+
Ile
GAT
[ENA]
¢þ
>WENV182127578
OHJU01059028
[OHJU] human gut metagenome; feces
189
265
+
Ile
GAT
[ENA]
¢þ
>WENV182409117
OIFG01001854
[OIFG] human gut metagenome; stool
1469
1396
-
Ile
GAT
[ENA]
¢þ
>WENV182526335
OIWT01014686
[OIWT] human gut metagenome; faeces
93
169
+
Ile
GAT
[ENA]
¢þ
>WENV182638708
OJLA01021954
[OJLA] metagenome; faeces
1617
1693
+
Ile
GAT
[ENA]
¢þ
>WENV182649071
OJMG01002366
[OJMG] human gut metagenome; feces
4656
4732
+
Ile
GAT
[ENA]
¢þ
>WENV182665188
OJNH01000027
[OJNH] human gut metagenome; feces
32249
32325
+
Ile
GAT
[ENA]
¢þ
>WENV182705766
OJOV01005599
[OJOV] human gut metagenome; stool sample
151
227
+
Ile
GAT
[ENA]
¢þ
>WENV182877712
OKRY01020825
[OKRY] human gut metagenome; faeces
892
816
-
Ile
GAT
[ENA]
¢þ
>WENV182943918
OKVI01001516
[OKVI] human gut metagenome; human gut
1307
1380
+
Ile
GAT
[ENA]
¢þ
>WENV182944186
OKVI01006678
[OKVI] human gut metagenome; human gut
2236
2160
-
Ile
GAT
[ENA]
¢þ
>WENV183010864
OLDY01000010
[OLDY] human gut metagenome; human gut
48163
48236
+
Ile
GAT
[ENA]
¢þ
>WENV183126516
OLNY01016504
[OLNY] human gut metagenome; faeces
139
215
+
Ile
GAT
[ENA]
¢þ
>WENV183127708
OLNZ01000646
[OLNZ] human gut metagenome; faeces
5375
5299
-
Ile
GAT
[ENA]
¢þ
>WENV183176939
OLPG01000049
[OLPG] human gut metagenome; faeces
10280
10204
-
Ile
GAT
[ENA]
¢þ
>WENV183200177
OLPW01000998
[OLPW] human gut metagenome; faeces
26998
27074
+
Ile
GAT
[ENA]
¢þ
>WENV183239409
OLRA01000668
[OLRA] human gut metagenome; faeces
17025
16949
-
Ile
GAT
[ENA]
¢þ
>WENV183328249
OLWA01007025
[OLWA] human gut metagenome; faeces
117
41
-
Ile
GAT
[ENA]
¢þ
>WENV183329536
OLWB01000536
[OLWB] human gut metagenome; faeces
23334
23410
+
Ile
GAT
[ENA]
¢þ
>WENV183365681
OLXN01025043
[OLXN] human gut metagenome; feces
212
288
+
Ile
GAT
[ENA]
¢þ
>WENV183366214
OLXO01003082
[OLXO] human gut metagenome; feces
2140
2064
-
Ile
GAT
[ENA]
¢þ
>WENV183382906
OLYL01031346
[OLYL] human gut metagenome; feces
543
467
-
Ile
GAT
[ENA]
¢þ
>WENV183385298
OLYN01061253
[OLYN] human gut metagenome; feces
370
446
+
Ile
GAT
[ENA]
¢þ
>WENV183399498
OLZQ01007155
[OLZQ] human gut metagenome; feces
500
576
+
Ile
GAT
[ENA]
¢þ
>WENV183424906
OMBK01000166
[OMBK] human gut metagenome; feces
40544
40620
+
Ile
GAT
[ENA]
¢þ
>WENV183435234
OMCA01003338
[OMCA] human gut metagenome; feces
2679
2603
-
Ile
GAT
[ENA]
¢þ
>WENV183439089
OMCF01031346
[OMCF] human gut metagenome; feces
543
467
-
Ile
GAT
[ENA]
¢þ
>WENV183485348
OMFP01042413
[OMFP] human gut metagenome; feces
106
182
+
Ile
GAT
[ENA]
¢þ
>WENV183489786
OMGA01019922
[OMGA] human gut metagenome; feces
1045
969
-
Ile
GAT
[ENA]
¢þ
>WENV183490397
OMGB01008375
[OMGB] human gut metagenome; feces
1034
958
-
Ile
GAT
[ENA]
¢þ
>WENV183771924
PPYF01001219
[PPYF] human gut metagenome; stool from patient with Crohn's disease
7596
7523
-
Ile
GAT
[ENA]
¢þ
>WENV183772820
PPYF01021435
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1450
1377
-
Ile
GAT
[ENA]
¢þ
>WENV183790680
PPYF01417131
[PPYF] human gut metagenome; stool from patient with Crohn's disease
1454
1381
-
Ile
GAT
[ENA]
¢þ
>WENV170470694
CEVG01004371
[CEVG] marine metagenome genome assembly TARA_140_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1146
1070
-
Ile
GAT
[ENA]
¢þ
>WENV170563584
CZCB01021860
[CZCB] anaerobic digester metagenome; anaerobic digester
2059
1983
-
Ile
GAT
[ENA]
¢þ
>C181094809
CP024107
Bacillota
Bacillus cytotoxicus CH_15 [CP024107]
30928
31004
+
Ile
GAT
-
¡û
>C181094869
CP024107
Bacillota
Bacillus cytotoxicus CH_15 [CP024107]
3719511
3719435
-
Ile
GAT
-
¡û
>C181094909
CP024107
Bacillota
Bacillus cytotoxicus CH_15 [CP024107]
2196677
2196601
-
Ile
GAT
-
¡û
>C191018938
CP021436
Bacillota
Bacillus thuringiensis C15 [CP021436]
814626
814702
+
Ile
GAT
-
¡û
>C191093476
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1912273
1912200
-
Ile
GAT
-
¡û
>C191093479
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1906756
1906683
-
Ile
GAT
-
¡û
>C191093494
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1704001
1703928
-
Ile
GAT
-
¡û
>C191093518
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1688084
1688011
-
Ile
GAT
-
¡û
>W1910901755
NGOI01000014
Bacillota
Lactobacillus johnsonii 117a [NGOI]
1357
1430
+
Ile
GAT
[ENA]
¡û
>W1910901771
NGOI01000043
Bacillota
Lactobacillus johnsonii 117a [NGOI]
332
259
-
Ile
GAT
[ENA]
¡û
>W1911323012
NUHO01000247
Bacillota
Bacillus cereus AFS053130 [NUHO]
372
448
+
Ile
GAT
[ENA]
¡û
>W1911595785
PNGP01000003
Bacillota
Lactobacillus iners UMB0033 [PNGP]
152249
152176
-
Ile
GAT
[ENA]
¡û
>W1911595813
PNGP01000011
Bacillota
Lactobacillus iners UMB0033 [PNGP]
1329
1404
+
Ile
GAT
[ENA]
¡û
>W1911595861
PNGQ01000009
Bacillota
Lactobacillus iners UMB0030 [PNGQ]
173
98
-
Ile
GAT
[ENA]
¡û
>W1911595863
PNGQ01000010
Bacillota
Lactobacillus iners UMB0030 [PNGQ]
287
360
+
Ile
GAT
[ENA]
¡û
>W1911595865
PNGQ01000011
Bacillota
Lactobacillus iners UMB0030 [PNGQ]
433
360
-
Ile
GAT
[ENA]
¡û
>W1810267996
PQWW01000032
Bacillota
Lactobacillus gasseri JG141 [PQWW]
171
98
-
Ile
GAT
[ENA]
¡û
>C151070468
CP010525
Bacillota
Heyndrickxia coagulans HM-08 [CP010525]
1187191
1187266
+
Ile
GAT
[Ensembl]
¡û
>W10103481
ACQN01000014
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
1249
1324
+
Ile
GAT
[ENA]
¡û
>W10113179
ADFT01000001
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
570
497
-
Ile
GAT
[ENA]
¡û
>W10113188
ADFT01000005
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
963
1036
+
Ile
GAT
[ENA]
¡û
>W10113201
ADFT01000005
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
5580
5653
+
Ile
GAT
[ENA]
¡û
>W10113216
ADFT01000019
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
33343
33416
+
Ile
GAT
[ENA]
¡û
>W10113230
ADFT01000026
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
10348
10275
-
Ile
GAT
[ENA]
¡û
>W10113241
ADFT01000026
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
573
500
-
Ile
GAT
[ENA]
¡û
>W11103637
ACQN01000014
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
1249
1324
+
Ile
GAT
[ENA]
¡û
>C11112934
CP002464
Bacillota
Lactobacillus johnsonii DPC 6026 [CP002464]
1871221
1871148
-
Ile
GAT
[Ensembl]
¡û
>C11112949
CP002464
Bacillota
Lactobacillus johnsonii DPC 6026 [CP002464]
1663670
1663597
-
Ile
GAT
[Ensembl]
¡û
>W11116406
ADFT01000001
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
570
497
-
Ile
GAT
[ENA]
¡û
>W11116415
ADFT01000005
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
963
1036
+
Ile
GAT
[ENA]
¡û
>W11116428
ADFT01000005
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
5580
5653
+
Ile
GAT
[ENA]
¡û
>W11116443
ADFT01000019
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
33343
33416
+
Ile
GAT
[ENA]
¡û
>W11116457
ADFT01000026
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
10348
10275
-
Ile
GAT
[ENA]
¡û
>W11116468
ADFT01000026
Bacillota
Lactobacillus gasseri 224-1 [ADFT]
573
500
-
Ile
GAT
[ENA]
¡û
>W121000741
ACWF01000129
Bacillota
Bacillus smithii 7_3_47FAA [ACWF]
1582
1509
-
Ile
GAT
[ENA]
¡û
>W1610032446
AYZQ01000012
Bacillota
Lacticaseibacillus brantae DSM 23927 [AYZQ]
221
146
-
Ile
GAT
[ENA]
¡û
>W1610032877
AZCN01000050
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM [AZCN]
17691
17616
-
Ile
GAT
[ENA]
¡û
>W1610044230
BBAJ01000086
Bacillota
Lacticaseibacillus camelliae DSM 22697 = JCM 13995 [BBAJ]
8031
7956
-
Ile
GAT
[ENA]
¡û
>W1610514748
FMAN01000001
Bacillota
Lactobacillus apis [FMAN]
793960
793887
-
Ile
GAT
[ENA]
¡û
>W1710029268
AYZQ01000012
Bacillota
Lacticaseibacillus brantae DSM 23927 [AYZQ]
221
146
-
Ile
GAT
[ENA]
¡û
>W1710030208
AZCN01000050
Bacillota
Loigolactobacillus coryniformis subsp. coryniformis KCTC 3167 = DSM [AZCN]
17691
17616
-
Ile
GAT
[ENA]
¡û
>W1710041390
BBAJ01000086
Bacillota
Lacticaseibacillus camelliae DSM 22697 = JCM 13995 [BBAJ]
8031
7956
-
Ile
GAT
[ENA]
¡û
>W1710500438
FMAN01000001
Bacillota
Lactobacillus apis [FMAN]
793960
793887
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK