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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158396 (25 seq.)
>C024110
CP000159
Rhodothermota
Salinibacter ruber DSM 13855 [CP000159]
1852407
1852483
+
Lys
CTT
[Ensembl]
¡û
>C181192099
CP030716
Rhodothermota
Salinibacter ruber P13 [CP030716]
1859105
1859181
+
Lys
CTT
-
¡û
>C191072363
CP030356
Rhodothermota
Salinibacter ruber P18 [CP030356]
1834747
1834823
+
Lys
CTT
-
¡û
>C191072407
CP030357
Rhodothermota
Salinibacter ruber SP38 [CP030357]
1827377
1827453
+
Lys
CTT
-
¡û
>C191072453
CP030361
Rhodothermota
Salinibacter ruber SP73 [CP030361]
1934550
1934626
+
Lys
CTT
-
¡û
>C191072497
CP030364
Rhodothermota
Salinibacter ruber M1 [CP030364]
1841812
1841888
+
Lys
CTT
-
¡û
>C191072542
CP030369
Rhodothermota
Salinibacter ruber RM158 [CP030369]
1892984
1893060
+
Lys
CTT
-
¡û
>W1910785965
MQWC01000004
Rhodothermota
Salinibacter sp. 10B [MQWC]
3799845
3799771
-
Lys
CTT
[ENA]
¡û
>W1910870031
NCQX01000002
Rhodothermota
Salinibacter ruber SP273 [NCQX]
107888
107812
-
Lys
CTT
[ENA]
¡û
>W1910870105
NCQY01000030
Rhodothermota
Salinibacter sp. AN15 [NCQY]
157264
157339
+
Lys
CTT
[ENA]
¡û
>W1910870130
NCQZ01000018
Rhodothermota
Salinibacter sp. LL19 [NCQZ]
57941
57866
-
Lys
CTT
[ENA]
¡û
>W1910870165
NCRA01000002
Rhodothermota
Salinibacter sp. AN4 [NCRA]
121348
121273
-
Lys
CTT
[ENA]
¡û
>W1910870212
NCRB01000006
Rhodothermota
Salinivenus iranica CB7 [NCRB]
40138
40212
+
Lys
CTT
[ENA]
¡û
>W1910870255
NCRC01000002
Rhodothermota
Salinivenus lutea DBO [NCRC]
101290
101216
-
Lys
CTT
[ENA]
¡û
>W2010726562
JACIFB010000003
Rhodothermota
Salinibacter ruber SD01 [JACIFB]
22625
22701
+
Lys
CTT
[ENA]
¡û
>W2010726597
JACIFC010000002
Rhodothermota
Salinibacter ruber SD11 [JACIFC]
329150
329074
-
Lys
CTT
[ENA]
¡û
>W2010726758
JACIFG010000002
Rhodothermota
Salinibacter ruber SP2521 [JACIFG]
143362
143286
-
Lys
CTT
[ENA]
¡û
>W2010894492
MQWC01000004
Rhodothermota
Salinibacter sp. 10B [MQWC]
3799845
3799771
-
Lys
CTT
[ENA]
¡û
>W2010938929
NCQX01000002
Rhodothermota
Salinibacter ruber SP273 [NCQX]
107888
107812
-
Lys
CTT
[ENA]
¡û
>W2010939003
NCQY01000030
Rhodothermota
Salinibacter sp. AN15 [NCQY]
157264
157339
+
Lys
CTT
[ENA]
¡û
>W2010939028
NCQZ01000018
Rhodothermota
Salinibacter sp. LL19 [NCQZ]
57941
57866
-
Lys
CTT
[ENA]
¡û
>W2010939063
NCRA01000002
Rhodothermota
Salinibacter sp. AN4 [NCRA]
121348
121273
-
Lys
CTT
[ENA]
¡û
>W2010939110
NCRB01000006
Rhodothermota
Salinivenus iranica CB7 [NCRB]
40138
40212
+
Lys
CTT
[ENA]
¡û
>W2010939153
NCRC01000002
Rhodothermota
Salinivenus lutea DBO [NCRC]
101290
101216
-
Lys
CTT
[ENA]
¡û
>C131018229
FP565814
Rhodothermota
Salinibacter ruber M8 [FP565814]
1916103
1916179
+
Lys
CTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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