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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158626 (69 seq.)
>W1710869725
LMJY01000012
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
398831
398755
-
Arg
TCT
[ENA]
¡û
>W1711387020
MEGC01000061
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
23377
23301
-
Arg
TCT
[ENA]
¡û
>W131098357
AORL01000010
Alphaproteobacteria
Sphingomonas sp. PR090111-T3T-6A [AORL]
1538
1462
-
Arg
TCT
[ENA]
¡û
>W1711505648
MKVS01000027
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
23448
23372
-
Arg
TCT
[ENA]
¡û
>WENV180020416
FTCZ01003289
[FTCZ] metagenome; soil
7643
7567
-
Arg
TCT
[ENA]
¡û
>WENV180026406
FTIT01066602
[FTIT] metagenome; soil
3940
3864
-
Arg
TCT
[ENA]
¡û
>WENV183688104
ORMF011236324
[ORMF] groundwater metagenome; groundwater
938
1014
+
Arg
TCT
[ENA]
¡û
>WENV183726699
PJTO01000079
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
94411
94335
-
Arg
TCT
[ENA]
¡û
>WENV170010279
APMI01012622
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
659
583
-
Arg
TCT
[ENA]
¡û
>WENV170576376
FRDC01000492
[FRDC] freshwater metagenome; water
34286
34210
-
Arg
TCT
[ENA]
¡û
>WENV170576483
FRDC01000695
[FRDC] freshwater metagenome; water
4009
4085
+
Arg
TCT
[ENA]
¡û
>WENV170770816
LXNI01000084
[LXNI] sponge metagenome; marine sponge reef
3527
3451
-
Arg
TCT
[ENA]
¡û
>WENV170772981
LXNJ01001198
[LXNJ] sponge metagenome; marine sponge reef
6137
6061
-
Arg
TCT
[ENA]
¡û
>WENV170959408
MKWU01004874
[MKWU] sponge metagenome;
14430
14506
+
Arg
TCT
[ENA]
¡û
>WENV170960926
MKWU01065681
[MKWU] sponge metagenome;
839
763
-
Arg
TCT
[ENA]
¡û
>WENV170960927
MKWU01065722
[MKWU] sponge metagenome;
838
762
-
Arg
TCT
[ENA]
¡û
>WENV170997456
MWWG01142062
[MWWG] soil metagenome; MG6-4 sample; Antarctic (ecotone) soil
175
251
+
Arg
TCT
[ENA]
¡û
>W1910651532
LYMM01000073
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
10641
10565
-
Arg
TCT
[ENA]
¡û
>W1910822135
MWMO01000001
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
303593
303669
+
Arg
TCT
[ENA]
¡û
>W1911247272
NSLI01000005
Alphaproteobacteria
Sphingomonas sp. 1PNM-20 [NSLI]
39133
39057
-
Arg
TCT
[ENA]
¡û
>W1810239618
PPSM01000028
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
33716
33640
-
Arg
TCT
[ENA]
¡û
>W1810538539
QDFY01000003
Alphaproteobacteria
Sphingosinicella terrae KCTC 52780 [QDFY]
104503
104427
-
Arg
TCT
[ENA]
¡û
>C151048385
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
1489254
1489178
-
Arg
TCT
[Ensembl]
¡û
>W2010137837
BLJH01000005
Alphaproteobacteria
Novosphingobium sp. TCA1 [BLJH]
235732
235656
-
Arg
TCT
[ENA]
¡û
>W2010308598
CABWKV010000001
Alphaproteobacteria
Novosphingobium sp. 9U [CABWKV]
345055
344979
-
Arg
TCT
[ENA]
¡û
>W2010320988
CACSJO010000030
Alphaproteobacteria
Novosphingobium sp. 18050 [CACSJO]
2784
2860
+
Arg
TCT
[ENA]
¡û
>W2010321424
CACSJU010000037
Alphaproteobacteria
Novosphingobium sp. 18052 [CACSJU]
43440
43364
-
Arg
TCT
[ENA]
¡û
>W2010675522
JACCGB010000001
Alphaproteobacteria
Novosphingobium sp. B11G3A [JACCGB]
3511728
3511804
+
Arg
TCT
[ENA]
¡û
>W2010708757
JACHLR010000005
Alphaproteobacteria
Novosphingobium chloroacetimidivorans S00245 [JACHLR]
67248
67172
-
Arg
TCT
[ENA]
¡û
>W2010725207
JACIDY010000003
Alphaproteobacteria
Novosphingobium fluoreni DSM 27568 [JACIDY]
233380
233304
-
Arg
TCT
[ENA]
¡û
>W2010726263
JACIEV010000002
Alphaproteobacteria
Sphingomonas jinjuensis YC6723 [JACIEV]
12298
12374
+
Arg
TCT
[ENA]
¡û
>W2010731787
JACIJI010000002
Alphaproteobacteria
Stakelama sediminis DSM 27203 [JACIJI]
629762
629838
+
Arg
TCT
[ENA]
¡û
>W2010796767
LYMM01000073
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
10641
10565
-
Arg
TCT
[ENA]
¡û
>W2010918557
MWMO01000001
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
303593
303669
+
Arg
TCT
[ENA]
¡û
>W2011070777
NSLI01000005
Alphaproteobacteria
Sphingomonas sp. 1PNM-20 [NSLI]
39133
39057
-
Arg
TCT
[ENA]
¡û
>W2011619529
SLVB01000005
Alphaproteobacteria
Novosphingobium sp. PhB165 [SLVB]
223033
223109
+
Arg
TCT
[ENA]
¡û
>W2011619577
SLVC01000006
Alphaproteobacteria
Novosphingobium sp. ST904 [SLVC]
152937
152861
-
Arg
TCT
[ENA]
¡û
>W2011629459
SMBO01000002
Alphaproteobacteria
Novosphingobium sp. PhB57 [SMBO]
511271
511347
+
Arg
TCT
[ENA]
¡û
>W2011647542
SNWD01000024
Alphaproteobacteria
Stakelama pacifica DSM 25059 [SNWD]
6536
6460
-
Arg
TCT
[ENA]
¡û
>W2011657999
SODQ01000007
Alphaproteobacteria
Novosphingobium sp. PhB55 [SODQ]
24684
24760
+
Arg
TCT
[ENA]
¡û
>W2012041260
VIRF01000072
Alphaproteobacteria
Novosphingobium sp. BW1 [VIRF]
6340
6264
-
Arg
TCT
[ENA]
¡û
>W2012047654
VIVX01000008
Alphaproteobacteria
Novosphingobium barchaimii 1192 [VIVX]
49656
49732
+
Arg
TCT
[ENA]
¡û
>W2012426144
WRPO01000016
Alphaproteobacteria
Novosphingobium sp. M24A2M [WRPO]
82225
82301
+
Arg
TCT
[ENA]
¡û
>W2110016768
BLTI01000004
Alphaproteobacteria
Novosphingobium sp. PY1 [BLTI]
493845
493921
+
Arg
TCT
[ENA]
¡û
>W2110026323
BMIH01000001
Alphaproteobacteria
Sphingomonas metalli CGMCC 1.15330 [BMIH]
224886
224962
+
Arg
TCT
[ENA]
¡û
>W2110030281
BMLK01000010
Alphaproteobacteria
Novosphingobium indicum CGMCC 1.6784 [BMLK]
95605
95681
+
Arg
TCT
[ENA]
¡û
>W2110030811
BMLU01000025
Alphaproteobacteria
Stakelama pacifica CGMCC 1.7294 [BMLU]
22777
22853
+
Arg
TCT
[ENA]
¡û
>W2110190488
JABWCU010000001
Alphaproteobacteria
Novosphingobium profundi F72 [JABWCU]
342955
343031
+
Arg
TCT
[ENA]
¡û
>W2110195974
JABXWS010000016
Alphaproteobacteria
Novosphingobium sp. HR1a [JABXWS]
11805
11881
+
Arg
TCT
[ENA]
¡û
>W2110659174
JAHWZX010000004
Alphaproteobacteria
Stakelama sp. CBK3Z-3 [JAHWZX]
202602
202526
-
Arg
TCT
[ENA]
¡û
>C211031826
CP021247
Alphaproteobacteria
Novosphingobium sp. KA1 [CP021247, CP021248]
598948
598872
-
Arg
TCT
-
¡û
>C211134427
CP060494
Alphaproteobacteria
Sphingosinithalassobacter sp. CS137 [CP060494]
194644
194568
-
Arg
TCT
-
¡û
>W1510012843
BBNP01000045
Alphaproteobacteria
Novosphingobium sp. MBES04 [BBNP]
71422
71498
+
Arg
TCT
[ENA]
¡û
>W1510024386
CCBH010000148
Alphaproteobacteria
Novosphingobium sp. KN65.2 [CCBH]
82862
82938
+
Arg
TCT
[ENA]
¡û
>C231201312
CP084930
Alphaproteobacteria
Sphingomonas morindae NBD5 [CP084930, CP084931]
540945
541021
+
Arg
TCT
-
¡û
>C231596020
CP117417
Alphaproteobacteria
Novosphingobium humi KACC 19094 [CP117417]
2211805
2211729
-
Arg
TCT
-
¡û
>C241126442
CP047895
Alphaproteobacteria
Sphingomonas changnyeongensis C33 [CP047895]
2716031
2715955
-
Arg
TCT
-
¡û
>C241197759
CP103868
Alphaproteobacteria
Novosphingobium humi G5 [CP103868]
1790091
1790167
+
Arg
TCT
-
¡û
>C241368971
CP141944
Alphaproteobacteria
Novosphingobium sp. RL4 [CP141944]
3513054
3512978
-
Arg
TCT
-
¡û
>C11116159
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
668013
668089
+
Arg
TCT
[Ensembl]
¡û
>W1511398004
JTDI01000002
Alphaproteobacteria
Novosphingobium malaysiense MUSC 273 [JTDI]
537425
537501
+
Arg
TCT
[ENA]
¡û
>W121009701
AGFM01000038
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
44593
44669
+
Arg
TCT
[ENA]
¡û
>W121119244
ALVC01000328
Alphaproteobacteria
Sphingomonas sp. LH128 [ALVC]
4170
4094
-
Arg
TCT
[ENA]
¡û
>W1610614825
LGJH01000156
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
150579
150655
+
Arg
TCT
[ENA]
¡û
>W1610732071
LMJY01000012
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
398831
398755
-
Arg
TCT
[ENA]
¡û
>W1710562073
FOOR01000008
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
79967
80043
+
Arg
TCT
[ENA]
¡û
>W1710573579
FOXP01000001
Alphaproteobacteria
Sphingomonas rubra [FOXP]
45977
45901
-
Arg
TCT
[ENA]
¡û
>W1710604582
FVZE01000005
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
24859
24935
+
Arg
TCT
[ENA]
¡û
>W1710736071
LGJH01000156
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
150579
150655
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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