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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158784 (121 seq.)
>W1710808945
LKDZ01000048
Betaproteobacteria
Variovorax boronicumulans [LKDZ]
54275
54351
+
Met
CAT
[ENA]
¡û
>W1710821702
LKTV01000080
Betaproteobacteria
Variovorax paradoxus [LKTV]
18288
18364
+
Met
CAT
[ENA]
¡û
>W1710821735
LKTW01000044
Betaproteobacteria
Variovorax paradoxus [LKTW]
18383
18459
+
Met
CAT
[ENA]
¡û
>W1710860157
LMCQ01000024
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
444681
444757
+
Met
CAT
[ENA]
¡û
>W1710861764
LMDW01000015
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
109909
109833
-
Met
CAT
[ENA]
¡û
>W1710862483
LMEK01000012
Betaproteobacteria
Variovorax sp. Root434 [LMEK]
595938
595862
-
Met
CAT
[ENA]
¡û
>W1710863077
LMEV01000015
Betaproteobacteria
Variovorax sp. Root473 [LMEV]
267090
267014
-
Met
CAT
[ENA]
¡û
>W1710870516
LMKO01000023
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
193639
193563
-
Met
CAT
[ENA]
¡û
>W1710882305
LMTS01000027
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
11981
11905
-
Met
CAT
[ENA]
¡û
>W1711074173
LSJH01000102
Betaproteobacteria
Xylophilus ampelinus [LSJH]
7342
7266
-
Met
CAT
[ENA]
¡û
>W1711250056
LYMK01000001
Betaproteobacteria
Variovorax sp. JS1663 [LYMK]
310114
310190
+
Met
CAT
[ENA]
¡û
>W131178402
ARLO01000048
Betaproteobacteria
Curvibacter lanceolatus ATCC 14669 [ARLO]
70251
70175
-
Met
CAT
[ENA]
¡û
>W1711751201
MUNO01000010
Betaproteobacteria
Polaromonas sp. A23 [MUNO]
107392
107316
-
Met
CAT
[ENA]
¡û
>PL171000247
CP000531
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 plasmid:pPNAP02
143245
143169
-
Met
CAT
[ENA]
¡û
>PL171000248
CP000532
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 plasmid:pPNAP03
141203
141279
+
Met
CAT
[ENA]
¡û
>PL171000249
CP000533
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 plasmid:pPNAP04
112170
112094
-
Met
CAT
[ENA]
¡û
>W131174633
ARIP01000061
Betaproteobacteria
Variovorax paradoxus 4MFCol3.1 [ARIP]
134661
134585
-
Met
CAT
[ENA]
¡û
>C017282
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
343179
343255
+
Met
CAT
[Ensembl]
¡û
>C017327
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
512117
512193
+
Met
CAT
[Ensembl]
¡û
>WENV181046943
ODXX01030415
[ODXX] human metagenome; G_DNA_Buccal mucosa
168
244
+
fMet
CAT
[ENA]
¡û
>WENV181364807
OFPD01001771
[OFPD] sediment metagenome; Lake sediment
171
95
-
fMet
CAT
[ENA]
¡û
>WENV181364915
OFPF01003950
[OFPF] sediment metagenome; Lake sediment
300
224
-
fMet
CAT
[ENA]
¡û
>WENV181370026
OFQR01006596
[OFQR] freshwater metagenome; Freshwater Lake
463
539
+
fMet
CAT
[ENA]
¡û
>WENV181370081
OFQR01012284
[OFQR] freshwater metagenome; Freshwater Lake
509
585
+
fMet
CAT
[ENA]
¡û
>WENV181370441
OFQS01013311
[OFQS] freshwater metagenome; Freshwater Lake
304
228
-
fMet
CAT
[ENA]
¡û
>W141170143
AXXG01000001
Betaproteobacteria
Variovorax sp. JGI 0001016-M12 [AXXG]
140526
140602
+
Met
CAT
[ENA]
¡û
>W141170374
AXXS01000058
Betaproteobacteria
Variovorax sp. JGI 0001013-M04 [AXXS]
695
619
-
Met
CAT
[ENA]
¡û
>W141170376
AXXS01000062
Betaproteobacteria
Variovorax sp. JGI 0001013-M04 [AXXS]
2404
2480
+
Met
CAT
[ENA]
¡û
>C08007641
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
512117
512193
+
Met
CAT
[Ensembl]
¡û
>W141266001
CCJP01000005
Betaproteobacteria
Polaromonas sp. CG9_12 CJ2 [CCJP]
1658469
1658393
-
Met
CAT
[ENA]
¡û
>W141276688
JADZ01000014
Betaproteobacteria
Curvibacter gracilis ATCC BAA-807 [JADZ]
150700
150776
+
Met
CAT
[ENA]
¡û
>WENV183661950
ORJL010151434
[ORJL] groundwater metagenome; groundwater
1943
1867
-
fMet
CAT
[ENA]
¡û
>WENV183669808
ORJL010879485
[ORJL] groundwater metagenome; groundwater
283
359
+
fMet
CAT
[ENA]
¡û
>WENV183670006
ORJL010898419
[ORJL] groundwater metagenome; groundwater
2814
2738
-
fMet
CAT
[ENA]
¡û
>WENV183679328
ORMF010047949
[ORMF] groundwater metagenome; groundwater
146
222
+
fMet
CAT
[ENA]
¡û
>WENV170011797
APMI01091681
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1322
1398
+
Met
CAT
[ENA]
¡û
>WENV170559286
CXWL01117778
[CXWL] groundwater metagenome; biofilm material
879
955
+
Met
CAT
[ENA]
¡û
>WENV170609421
FUWD011394173
[FUWD] metagenome; unknown
305
229
-
Met
CAT
[ENA]
¡û
>WENV170706860
LNAP01007693
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
1728
1652
-
Met
CAT
[ENA]
¡û
>WENV170708726
LNAQ01000267
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
9579
9503
-
Met
CAT
[ENA]
¡û
>WENV170712585
LNFM01015220
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2746
2822
+
Met
CAT
[ENA]
¡û
>C181159378
CP027773
Betaproteobacteria
Variovorax sp. PMC12 [CP027773, CP027774]
4416256
4416332
+
Met
CAT
-
¡û
>C191073191
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
950445
950369
-
Met
CAT
-
¡û
>W141565115
JIBH01000001
Betaproteobacteria
Polaromonas sp. EUR3 1.2.1 [JIBH]
3726441
3726365
-
Met
CAT
[ENA]
¡û
>W141695477
JMDZ01000008
Betaproteobacteria
Polaromonas glacialis [JMDZ]
577987
577911
-
Met
CAT
[ENA]
¡û
>W141695489
JMDZ01000017
Betaproteobacteria
Polaromonas glacialis [JMDZ]
29061
28985
-
Met
CAT
[ENA]
¡û
>W141695490
JMDZ01000031
Betaproteobacteria
Polaromonas glacialis [JMDZ]
14352
14428
+
Met
CAT
[ENA]
¡û
>W09101612
AAFQ02000004
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
124894
124970
+
Met
CAT
[ENA]
¡û
>W09104852
AANM01000001
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
422898
422974
+
Met
CAT
[ENA]
¡û
>W09104853
AANM01000001
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
477744
477668
-
Met
CAT
[ENA]
¡û
>W09104867
AANM01000010
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
108364
108288
-
Met
CAT
[ENA]
¡û
>W09104889
AANM01000024
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [AANM]
6667
6743
+
Met
CAT
[ENA]
¡û
>W1910699893
MERZ01000331
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 [MERZ]
31842
31766
-
Met
CAT
[ENA]
¡û
>W1910859511
NBZV01000026
Betaproteobacteria
Polaromonas sp. AER18D-145 [NBZV]
5740
5664
-
Met
CAT
[ENA]
¡û
>W1910859548
NBZW01000020
Betaproteobacteria
Polaromonas sp. AET17H-212 [NBZW]
6406
6330
-
Met
CAT
[ENA]
¡û
>W1910888713
NESA01000010
Betaproteobacteria
Limnohabitans sp. JirII-31 [NESA]
65948
66024
+
Met
CAT
[ENA]
¡û
>W1911647367
QAJK01000163
Betaproteobacteria
Variovorax sp. KBW07 [QAJK]
311
235
-
Met
CAT
[ENA]
¡û
>W1911775316
QXMN01000020
Betaproteobacteria
Acidovorax cavernicola 1011MAR4D40.2 [QXMN]
92504
92580
+
Met
CAT
[ENA]
¡û
>SRA1001919
SRR001308.131339
Metagenomic characterization of a wastewater treatment plant (SRP000180)
236
160
-
Met
CAT
[SRA]
>SRA1001972
SRR001308.156409
Metagenomic characterization of a wastewater treatment plant (SRP000180)
236
160
-
Met
CAT
[SRA]
>SRA1002213
SRR001308.306588
Metagenomic characterization of a wastewater treatment plant (SRP000180)
236
160
-
Met
CAT
[SRA]
>SRA1003262
SRR002326.349191
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
109
185
+
Met
CAT
[SRA]
>SRA1004189
SRR002328.190446
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
109
33
-
Met
CAT
[SRA]
>SRA1004238
SRR002328.216529
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
130
206
+
Met
CAT
[SRA]
>SRA1004304
SRR002328.258734
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
188
264
+
Met
CAT
[SRA]
>W1810392039
PXZZ01000015
Betaproteobacteria
Variovorax sp. WS11 [PXZZ]
22086
22010
-
Met
CAT
[ENA]
¡û
>W1810682485
QKUE01000008
Betaproteobacteria
Variovorax sp. GV004 [QKUE]
303072
303148
+
Met
CAT
[ENA]
¡û
>SRA1014582
SRR023845.210504
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria (SRP001120)
83
159
+
Met
CAT
[SRA]
>W2010108414
BKDI01000007
Betaproteobacteria
Variovorax boronicumulans c24 [BKDI]
348712
348636
-
fMet
CAT
[ENA]
¡û
>W2010717549
JACHYD010000005
Betaproteobacteria
Variovorax sp. Sphag1J [JACHYD]
503449
503373
-
fMet
CAT
[ENA]
¡û
>W2010721688
JACIBG010000005
Betaproteobacteria
Variovorax sp. BK613 [JACIBG]
527675
527751
+
fMet
CAT
[ENA]
¡û
>W2010782021
LMUW01000044
Betaproteobacteria
Xenophilus sp. L33 [LMUW]
19342
19266
-
fMet
CAT
[ENA]
¡û
>W2010833319
MERZ01000331
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 [MERZ]
31842
31766
-
fMet
CAT
[ENA]
¡û
>W2010936741
NBZV01000026
Betaproteobacteria
Polaromonas sp. AER18D-145 [NBZV]
5740
5664
-
fMet
CAT
[ENA]
¡û
>W2010936778
NBZW01000020
Betaproteobacteria
Polaromonas sp. AET17H-212 [NBZW]
6406
6330
-
fMet
CAT
[ENA]
¡û
>W2011482838
RQXU01000007
Betaproteobacteria
Variovorax sp. T529 [RQXU]
48948
48872
-
fMet
CAT
[ENA]
¡û
>W2011495794
RXFR01000007
Betaproteobacteria
Variovorax sp. 553 [RXFR]
445439
445515
+
fMet
CAT
[ENA]
¡û
>W2012046898
VIVL01000001
Betaproteobacteria
Variovorax sp. T529 [VIVL]
513536
513612
+
fMet
CAT
[ENA]
¡û
>W2012344176
WJBU01000015
Betaproteobacteria
Caenimonas koreensis DSM 17982 EMB320 [WJBU]
101416
101492
+
fMet
CAT
[ENA]
¡û
>W2110026318
BMIG01000016
Betaproteobacteria
Polaromonas eurypsychrophila CGMCC 1.15322 [BMIG]
7206
7130
-
fMet
CAT
[ENA]
¡û
>W2110363564
JADOVE010000019
Betaproteobacteria
Polaromonas sp. CG_9.11 [JADOVE]
76310
76234
-
fMet
CAT
[ENA]
¡û
>W2110363590
JADOVF010000008
Betaproteobacteria
Polaromonas sp. CG_9.2 [JADOVF]
137775
137851
+
fMet
CAT
[ENA]
¡û
>W2110363631
JADOVG010000008
Betaproteobacteria
Polaromonas sp. CG_9.7 [JADOVG]
54341
54265
-
fMet
CAT
[ENA]
¡û
>W2110395480
JADWYS010000001
Betaproteobacteria
Caenimonas sp. DR4.4 [JADWYS]
2502206
2502130
-
fMet
CAT
[ENA]
¡û
>W2110457146
JAEVYQ010000021
Betaproteobacteria
Variovorax paradoxus BFB1_13 [JAEVYQ]
18392
18468
+
fMet
CAT
[ENA]
¡û
>W2110541682
JAGGNU010000010
Betaproteobacteria
Variovorax paradoxus ISL-3 [JAGGNU]
127418
127494
+
fMet
CAT
[ENA]
¡û
>C201060720
CP035503
Betaproteobacteria
Rhodoferax sp. CHu59-6-5 [CP035503]
4027891
4027815
-
fMet
CAT
-
¡û
>C201172313
CP046023
Betaproteobacteria
Polaromonas sp. Pch-P [CP046023]
1044523
1044599
+
fMet
CAT
-
¡û
>C201307047
LR594671
Betaproteobacteria
Variovorax sp. PBL-E5 [LR594671]
532863
532939
+
fMet
CAT
-
¡û
>C211132318
CP060296
Betaproteobacteria
Variovorax sp. PAMC28562 [CP060296]
1614222
1614298
+
fMet
CAT
-
¡û
>C211172912
CP063166
Betaproteobacteria
Variovorax paradoxus VAI-C [CP063166]
6368980
6368904
-
fMet
CAT
-
¡û
>C231247380
CP087964
Betaproteobacteria
Polaromonas sp. P1(28)-8 [CP087964]
520465
520541
+
fMet
CAT
-
¡û
>C231247417
CP087965
Betaproteobacteria
Polaromonas sp. P2-4 [CP087965]
3315052
3315128
+
fMet
CAT
-
¡û
>C231247475
CP087966
Betaproteobacteria
Polaromonas sp. P1-6 [CP087966]
2088922
2088846
-
fMet
CAT
-
¡û
>C241150391
CP051461
Betaproteobacteria
Polaromonas vacuolata KCTC 22033 [CP051461]
1586745
1586821
+
fMet
CAT
-
¡û
>C241150408
CP051461
Betaproteobacteria
Polaromonas vacuolata KCTC 22033 [CP051461]
3467713
3467637
-
fMet
CAT
-
¡û
>C241342620
CP138513
Betaproteobacteria
Variovorax paradoxus SPNA7 [CP138513]
5607777
5607701
-
fMet
CAT
-
¡û
>W1511352952
JROV01000070
Betaproteobacteria
Variovorax paradoxus ZNC0006 [JROV]
2533
2457
-
Met
CAT
[ENA]
¡û
>W1511508912
JXQQ01000008
Betaproteobacteria
Variovorax paradoxus MEDvA23 [JXQQ]
303389
303465
+
Met
CAT
[ENA]
¡û
>W1511555008
JZWI01000022
Betaproteobacteria
Variovorax paradoxus TBEA6 [JZWI]
19450
19374
-
Met
CAT
[ENA]
¡û
>WENV058506
AACY023331432
Marine microbial communities from Global Ocean Sampling (GOS)
430
354
-
Met
CAT
[ENA]
>WENV058858
AACY023344693
Marine microbial communities from Global Ocean Sampling (GOS)
1050
974
-
Met
CAT
[ENA]
>W121084918
AKIV01000065
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
75091
75167
+
Met
CAT
[ENA]
¡û
>W1610072251
BCUU01000023
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
23069
22993
-
Met
CAT
[ENA]
¡û
>W1610076220
BCYO01000029
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
5686
5610
-
Met
CAT
[ENA]
¡û
>W121084952
AKIW01000018
Betaproteobacteria
Variovorax sp. CF313 [AKIW]
56633
56709
+
Met
CAT
[ENA]
¡û
>W1610685664
LKTV01000080
Betaproteobacteria
Variovorax paradoxus [LKTV]
18288
18364
+
Met
CAT
[ENA]
¡û
>W1610722503
LMCQ01000024
Betaproteobacteria
Variovorax sp. Root318D1 [LMCQ]
444681
444757
+
Met
CAT
[ENA]
¡û
>W1610724110
LMDW01000015
Betaproteobacteria
Variovorax sp. Root411 [LMDW]
109909
109833
-
Met
CAT
[ENA]
¡û
>W1610732862
LMKO01000023
Betaproteobacteria
Xylophilus sp. Leaf220 [LMKO]
193639
193563
-
Met
CAT
[ENA]
¡û
>W1610744231
LMTS01000027
Betaproteobacteria
Variovorax sp. WDL1 [LMTS]
11981
11905
-
Met
CAT
[ENA]
¡û
>W1610913478
LSJH01000102
Betaproteobacteria
Xylophilus ampelinus [LSJH]
7342
7266
-
Met
CAT
[ENA]
¡û
>W1710069453
BCUU01000023
Betaproteobacteria
Variovorax soli NBRC 106424 [BCUU]
23069
22993
-
Met
CAT
[ENA]
¡û
>W1710074035
BCYO01000029
Betaproteobacteria
Polaromonas jejuensis NBRC 106434 [BCYO]
5686
5610
-
Met
CAT
[ENA]
¡û
>W1710512938
FMZU01000006
Betaproteobacteria
Variovorax sp. CF079 [FMZU]
232065
232141
+
Met
CAT
[ENA]
¡û
>W1710523411
FNHX01000009
Betaproteobacteria
Polaromonas sp. JS666 [FNHX]
75146
75222
+
Met
CAT
[ENA]
¡û
>W1710531358
FNPM01000003
Betaproteobacteria
Variovorax sp. YR266 [FNPM]
43853
43777
-
Met
CAT
[ENA]
¡û
>W1710542714
FNZJ01000005
Betaproteobacteria
Variovorax sp. OK202 [FNZJ]
400469
400545
+
Met
CAT
[ENA]
¡û
>W1710557395
FOKZ01000008
Betaproteobacteria
Polaromonas sp. OV174 [FOKZ]
56698
56622
-
Met
CAT
[ENA]
¡û
>W1710562285
FOOV01000025
Betaproteobacteria
Variovorax sp. NFACC27 [FOOV]
60524
60448
-
Met
CAT
[ENA]
¡û
>W1710578310
FPBM01000005
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
151803
151727
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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