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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.158984 (39 seq.)
>W131224797
AUDB01000003
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
202785
202708
-
Glu
TTC
[ENA]
¡û
>W131224798
AUDB01000003
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
202607
202530
-
Glu
TTC
[ENA]
¡û
>W131224800
AUDB01000003
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [AUDB]
202092
202015
-
Glu
TTC
[ENA]
¡û
>WENV183747665
PPCM01015173
[PPCM] marine sediment metagenome; marine sediment
230
153
-
Glu
TTC
[ENA]
¢þ
>WENV183747820
PPCM01043870
[PPCM] marine sediment metagenome; marine sediment
221
144
-
Glu
TTC
[ENA]
¢þ
>WENV170646502
JQGR01016376
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
144
67
-
Glu
TTC
[ENA]
¢þ
>W09118034
ACCN01000014
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
51497
51574
+
Glu
TTC
[ENA]
¡û
>W09118035
ACCN01000014
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
51667
51744
+
Glu
TTC
[ENA]
¡û
>W09118037
ACCN01000014
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
53032
53109
+
Glu
TTC
[ENA]
¡û
>W09118038
ACCN01000014
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
53205
53282
+
Glu
TTC
[ENA]
¡û
>W09118039
ACCN01000014
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
53378
53455
+
Glu
TTC
[ENA]
¡û
>C09104220
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3429003
3429080
+
Glu
TTC
[Ensembl]
¡û
>C09104221
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3429173
3429250
+
Glu
TTC
[Ensembl]
¡û
>C09104223
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3430539
3430616
+
Glu
TTC
[Ensembl]
¡û
>C09104224
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3430712
3430789
+
Glu
TTC
[Ensembl]
¡û
>C09104225
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3430885
3430962
+
Glu
TTC
[Ensembl]
¡û
>C141011949
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1896423
1896346
-
Glu
TTC
-
¡û
>C141011950
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1896245
1896168
-
Glu
TTC
-
¡û
>C141011952
FO203519
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis [FO203519]
1895730
1895653
-
Glu
TTC
-
¡û
>C131018131
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1896423
1896346
-
Glu
TTC
[Ensembl]
¡û
>C131018132
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1896245
1896168
-
Glu
TTC
[Ensembl]
¡û
>C131018134
FO203522
Thermodesulfobacteriota
Maridesulfovibrio hydrothermalis AM13 = DSM 14728 [FO203522]
1895730
1895653
-
Glu
TTC
[Ensembl]
¡û
>W1610550409
JXMS01000002
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
129141
129218
+
Glu
TTC
[ENA]
¡û
>W1610550411
JXMS01000002
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
167585
167662
+
Glu
TTC
[ENA]
¡û
>W1610550432
JXMS01000005
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
151815
151738
-
Glu
TTC
[ENA]
¡û
>W1610550434
JXMS01000005
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
65269
65192
-
Glu
TTC
[ENA]
¡û
>W1610550480
JXMS01000020
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
45719
45642
-
Glu
TTC
[ENA]
¡û
>W1710594466
FSRG01000004
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
643773
643850
+
Glu
TTC
[ENA]
¡û
>W1710594474
FSRG01000005
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
111197
111274
+
Glu
TTC
[ENA]
¡û
>W1710594476
FSRG01000005
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
176648
176725
+
Glu
TTC
[ENA]
¡û
>W1710594477
FSRG01000005
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
250559
250636
+
Glu
TTC
[ENA]
¡û
>W1710594479
FSRG01000005
Thermodesulfobacteriota
Halodesulfovibrio marinisediminis DSM 17456 [FSRG]
306334
306411
+
Glu
TTC
[ENA]
¡û
>W1710602197
FUYA01000006
Thermodesulfobacteriota
Desulfobaculum bizertense DSM 18034 [FUYA]
60012
60089
+
Glu
TTC
[ENA]
¡û
>W1710602200
FUYA01000006
Thermodesulfobacteriota
Desulfobaculum bizertense DSM 18034 [FUYA]
201851
201774
-
Glu
TTC
[ENA]
¡û
>W1710660134
JXMS01000002
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
129141
129218
+
Glu
TTC
[ENA]
¡û
>W1710660136
JXMS01000002
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
167585
167662
+
Glu
TTC
[ENA]
¡û
>W1710660157
JXMS01000005
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
151815
151738
-
Glu
TTC
[ENA]
¡û
>W1710660159
JXMS01000005
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
65269
65192
-
Glu
TTC
[ENA]
¡û
>W1710660205
JXMS01000020
Thermodesulfobacteriota
Halodesulfovibrio spirochaetisodalis [JXMS]
45719
45642
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK