This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159008 (7 seq.)
>A171003264
CP003534
Euryarchaeota
Pyrococcus sp. ST04 [CP003534]
683122
683199
+
Lys
TTT
-
¡û
>A171003344
CP003685
Euryarchaeota
Pyrococcus furiosus COM1 [CP003685]
310751
310828
+
Lys
TTT
-
¡û
>A171004052
CP006965
Euryarchaeota
Thermococcus paralvinellae ES1 [CP006965]
1865578
1865501
-
Lys
TTT
-
¡û
>A171005901
CP010835
Euryarchaeota
Pyrococcus kukulkanii NCB100 [CP010835]
641282
641205
-
Lys
TTT
-
¡û
>A171007500
LN999010
Euryarchaeota
Thermococcus chitonophagus [LN999010]
1136616
1136693
+
Lys
TTT
-
¡û
>At1828
AE009950
Euryarchaeota
Pyrococcus furiosus DSM 3638 [AE009950]
508454
508531
+
Lys
TTT
[Ensembl]
¡û
>WENV170676716
LDZS01002034
[LDZS] terrestrial metagenome; oil reservoir sample K3
15501
15424
-
Lys
TTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK